Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02815 ATGCTTTATTGGCCTCTAATTTCAGGGGAAAAAAGTAAACCCATTTCCGCCCAAGACTCCGGCGGCACACCGTCGCCGGAAAAGGAGCACGTGGGTAAGTGGTGCTGGGTAGAGAGAGAAACAGAAACGGTGTGTGTGCATCATTGTTATGGTATGGCTCAGCAGAGGCAATCGGGAATGGAGAGGCTTGGGGTGAGAGTGGGGGCCCACGATCTGCACCACACCAACGGTTCCGGCGATCACGTCGCTGTCGGGATTCGGGGTGGCGCCGCTCACAAGCAGCCGCGGTCCCGGCGATCGGCGCGATCCGACAGGAGCACGCAACTGTCGGTGGCGGCAATCCTTGTTTTCCTCTTCCTCGTACTTGTCGTCACTGTGCTCGTCTTCTCTTACATTTCTAGAGACGGTGAAGTTCTGAGAGGGTTTTTGAATCTGTGGTTTTTCTTGGTTGATGTTTGCTTTGGGCTGTTCAGTTGGTTGATTGGGACTAGATTGTCAATCGGTGTTGCAGAAATAAGTAACAATGGCGATGACGGTGATGACGGTGTTGATTTAAAGAGTGATCCTGATTTTCTTACAAATGTACCTCGGATACAGAAGAAGAAAGTCCTTGACTTTGGGCATGGCTCTGGAGGACATGGTCGAGATTCAAGATATTGGGATAAGGATGATAGGAGAAGGGATGGTGATTACGATGAGGATATGATGGAGCAGACAAGTAAGGATCCTGGAGATGAAATTGCTAAAGATGATGATGCTGTAAAGAAGGACCACGATACCAAGTCTTCTCACGATGGCTTAAAGCGGAGGGGCGAGGGCTTGTATAACGAAGCAGGACGTCAGGAGTTGAAAAGATATGAAGCAGAATATGAGGCTTCTTTGAAGAATCTGAGACACTCCACCGAAGTTGATGTGAAACTGGTGCATGACACTAACCTTGAAAAGAAAAGTGCGTCGGATGACATTGATGATGAATATGATGATTTTTTTGATTTTAATGATGCTCAATTGGAGAACTCTAGCGATAGCAGAAATATGAGAGGGGAACATTCTAATGCCAATGTGTTAAGCTTGGACAATGAAGTTCAGAAACAGAAAGAATCTAATGATTCTTTTGCTGAGGAAAACAATGATGATGTTACTTCTGAGGATGTTGAAGGAGCGTCTTTCTTGAATAAAAAATATCCTCATGAGGGAAAAACAAATTCTAAACACGAAAGTATTTTTAATGGACAATCAACTAGAAAATCACATCCTGAAACAAAGAAGAAAGTCAGGCGACGTAAATTTTCAGGATCCTGTGAGATGAAATTGCTAAACTCAACTTCACAGCTTGTAGAACCCCTAGAAAGTCGAAAATTTTCAAGATTTAACTTACAGTACACAGAGATGGAAGAGAAACCCCTGGGAGAAGAACAATGGGTTCCCAGATTTGCTGGCCATCAGAGCTTAGAAGAGAGAGAAAGTTCATTTTTGGCCCGTGATCAGCAAATAAACTGTGGTTTTGTTAAAGGTCCTGAAGGGTCTGAAAGTACAGGATTTGACTTGACAGAAGACGATGCAAGTTACATCAGCAGGTGCCACATTGCTGTGATCTCATGCATATTTGGAAATTCTGATCATTTGAGGACCCCAGCCACCAAAACGGTCACTCGATTGTCAAGGAAGAATGTCTGCTTTGTTATGTTTACCGATGAAATTACAGTTCGGACCCTGTCTTCAGAAGGGCATGTGCCTGATAGAATGGGTTTCATTGGCTTTTGGAAGTTGGTGGTGGTGAAGAATCTACCATATGATGATATGCGAAGAGTGGGCAAAATACCCAAGTTATTGCCTCATCGACTTTTCCCTTTTGCAAGGTATTCAATTTGGCTGGATAGCAAATTACGGCTGCAGCTTGATCCTTTACTTATCTTGGAGTACTTTTTGTGGCGCAAGGGTTATGAATTTGCAATATCCAATCATTACGATCGGCATTGTGTGTGGGAAGAAGTAGCACAAAACAAGAAATTGAACAAGTATAATCACACAGTTATAGATCAGCAGTTTTCGTTTTACCGGGCTGATGGACTTGAAAGATTTGATGCATCGGATCCAAATAAGCTTCTTCCAAGCAATGTACCTGAAGGTTCTTTTATTATCAGAGCGCACACCCCAATGTCAAATTTGTTTTCTTGTCTTTGGTTCAATGAAATCGATCGGTTCACTCCTCGTGATCAGCTGAGTTTTGCATATACATATCAGAAGCTGAGAAGGATGAATCCAGACAAACCATTTCATCTGAACATGTTCAAGGACTGTGAAAGGAGACACATAGCCAAGTTGTTCCGTCATAGATTGGATGAGAAGAGGATACATCATTGA 2364 0.4336 MLYWPLISGEKSKPISAQDSGGTPSPEKEHVGKWCWVERETETVCVHHCYGMAQQRQSGMERLGVRVGAHDLHHTNGSGDHVAVGIRGGAAHKQPRSRRSARSDRSTQLSVAAILVFLFLVLVVTVLVFSYISRDGEVLRGFLNLWFFLVDVCFGLFSWLIGTRLSIGVAEISNNGDDGDDGVDLKSDPDFLTNVPRIQKKKVLDFGHGSGGHGRDSRYWDKDDRRRDGDYDEDMMEQTSKDPGDEIAKDDDAVKKDHDTKSSHDGLKRRGEGLYNEAGRQELKRYEAEYEASLKNLRHSTEVDVKLVHDTNLEKKSASDDIDDEYDDFFDFNDAQLENSSDSRNMRGEHSNANVLSLDNEVQKQKESNDSFAEENNDDVTSEDVEGASFLNKKYPHEGKTNSKHESIFNGQSTRKSHPETKKKVRRRKFSGSCEMKLLNSTSQLVEPLESRKFSRFNLQYTEMEEKPLGEEQWVPRFAGHQSLEERESSFLARDQQINCGFVKGPEGSESTGFDLTEDDASYISRCHIAVISCIFGNSDHLRTPATKTVTRLSRKNVCFVMFTDEITVRTLSSEGHVPDRMGFIGFWKLVVVKNLPYDDMRRVGKIPKLLPHRLFPFARYSIWLDSKLRLQLDPLLILEYFLWRKGYEFAISNHYDRHCVWEEVAQNKKLNKYNHTVIDQQFSFYRADGLERFDASDPNKLLPSNVPEGSFIIRAHTPMSNLFSCLWFNEIDRFTPRDQLSFAYTYQKLRRMNPDKPFHLNMFKDCERRHIAKLFRHRLDEKRIHH 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02815 787 Coils Coil 276 296 - -
Vimu3g02815 787 MobiDBLite consensus disorder prediction 338 429 - -
Vimu3g02815 787 MobiDBLite consensus disorder prediction 338 362 - -
Vimu3g02815 787 PANTHER ALKALINE CERAMIDASE-RELATED 96 784 IPR006852 -
Vimu3g02815 787 Pfam Protein of unknown function (DUF616) 459 778 IPR006852 -
Vimu3g02815 787 MobiDBLite consensus disorder prediction 390 404 - -
Vimu3g02815 787 MobiDBLite consensus disorder prediction 204 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02815 Vimu-Chr3 42403302 42412631 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02815 - - gmx:100810524 1164.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02815 3 42403302 42412631 Vimu3g02815 3 42403302 42412631 ECH