Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04675 ATGTCTCAGCTTCTTCAAACCCCGTTCCTCCATTCCACCACCGTTCTCCGCCGCACTCCCACTTCACTCCACCGCACTTCAACCCCCACCAACCACTTCGTCGTCCGTGCCAAGATCCGAGAGATTTTCATGCCCGCACTTAGCTCCACTATGACCGAGGGCAAAATCGTTTCATGGATCAAATCCGAAGGCGATAAACTCTCCAAAGGCGACAGCGTTGTCGTCGTTGAGTCCGACAAGGCGGACATGGATGTCGAGACTTTCTATGATGGTATCCTTGCTGCTATTGTTGTTGAAGAAGGTGGCGTCGCTGCCGTTGGATCTCCGATAGCATTTCTCGCTGAGACTGAAGAGGAAATCGAACAAGCCAGGTCCAAAGCCCTCTCTTCTTCATCATCTTCATCATCCCCTTCAGCATCTTCTTCTACTCCAGCACCTCCAGCACCCGCACCTGCACCTGCACCCGCACCAGTAGAATCTCAACCGAAGAAAGTTGTTGCAGCGGCGGTTGTGTCTAAACATCCTGCTTCGGAGGGAGGGAAGAGAGTAGTGGCGTCTCCTTATGCCAAGAAATTGGCTAAGGAATTGAAGGTGGAGTTGGGTCAAATTGTTGGGACTGGACCTTCAGGGAGGATTGTGGCTAAAGATGTTGAGGCATTTGCAGCTTCAGACAGTTCTTCTTCCGCGAGTGTTGCGGCCGAGCCTGCCAAGACGCCTGCCAAGACTGCGGTTTCGGGGGTTGAATTGGGAACTGTGGTGCCGTTTACGACAATGCAGAATGCTGTGAGTAGGAACATGGTGGAGAGTTTGGCTGTTCCCACTTTCAGAGTTGGTTACACTTTCACCACTGATGCACTTGATGCTCTCTACAAGAAGATTAAATCAAAGGGAGTTACTATGACAGCATTGCTTGCCAAGGCTACAGCACTTGCGCTGGCTAAGCACCCTGTTATAAACTCTAGTTGTAGGGATGGTAACAGCTTTACTTACAATAGCAGTATCAACATTGCAGTTGCCGTGGCTATAGATGGCGGACTTATTACTCCAGTGCTTCAGGATGCCGATAAGGTTGATGTCTATTCTTTGTCAAGAAAGTGGAAGGAGTTGGTTGATAAGGCCCGAGCTAAGCAGCTGCAGCCTCAGGAATACACCACAGGTACTTTCACCCTTTCCAATCTGGGAATGTTTGGCGTTGACCGCTTCGATGCTATTCTGCCTCCTGGAACTGGAGCAATTATGGCAGTTGGATCATCACAGCCAACTGTTGTGGCTACCAAGGATGGTCGCATTGGCGTGAAGAACCAAATGCAGGTCAATGTTACGGCAGATCATCGAGTAATCTACGGTTCCGATCTAGCTCTGTTCTTGCAAACCCTGTCACAGATCATTGAAGACCCTAAAGATCTTACTTTCTAG 1416 0.4972 MSQLLQTPFLHSTTVLRRTPTSLHRTSTPTNHFVVRAKIREIFMPALSSTMTEGKIVSWIKSEGDKLSKGDSVVVVESDKADMDVETFYDGILAAIVVEEGGVAAVGSPIAFLAETEEEIEQARSKALSSSSSSSSPSASSSTPAPPAPAPAPAPAPVESQPKKVVAAAVVSKHPASEGGKRVVASPYAKKLAKELKVELGQIVGTGPSGRIVAKDVEAFAASDSSSSASVAAEPAKTPAKTAVSGVELGTVVPFTTMQNAVSRNMVESLAVPTFRVGYTFTTDALDALYKKIKSKGVTMTALLAKATALALAKHPVINSSCRDGNSFTYNSSINIAVAVAIDGGLITPVLQDADKVDVYSLSRKWKELVDKARAKQLQPQEYTTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGSSQPTVVATKDGRIGVKNQMQVNVTADHRVIYGSDLALFLQTLSQIIEDPKDLTF 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04675 471 Pfam Biotin-requiring enzyme 41 111 IPR000089 -
Vivi1g04675 471 FunFam Acetyltransferase component of pyruvate dehydrogenase complex 35 138 - -
Vivi1g04675 471 ProSiteProfiles Biotinyl/lipoyl domain profile. 39 114 IPR000089 -
Vivi1g04675 471 MobiDBLite consensus disorder prediction 142 158 - -
Vivi1g04675 471 CDD lipoyl_domain 41 111 - -
Vivi1g04675 471 FunFam Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex 247 470 - -
Vivi1g04675 471 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 251 469 IPR001078 GO:0016746
Vivi1g04675 471 SUPERFAMILY CoA-dependent acyltransferases 240 467 - -
Vivi1g04675 471 MobiDBLite consensus disorder prediction 125 141 - -
Vivi1g04675 471 ProSiteProfiles Peripheral subunit-binding (PSBD) domain profile. 184 221 IPR004167 GO:0016746
Vivi1g04675 471 Gene3D - 240 470 IPR023213 -
Vivi1g04675 471 SUPERFAMILY Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 176 222 IPR036625 GO:0016746
Vivi1g04675 471 Gene3D - 35 139 - -
Vivi1g04675 471 Gene3D - 172 223 IPR036625 GO:0016746
Vivi1g04675 471 PANTHER DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED 23 470 IPR045257 GO:0006086|GO:0045254
Vivi1g04675 471 SUPERFAMILY Single hybrid motif 38 129 IPR011053 -
Vivi1g04675 471 MobiDBLite consensus disorder prediction 123 159 - -
Vivi1g04675 471 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 64 93 IPR003016 -
Vivi1g04675 471 Pfam e3 binding domain 183 218 IPR004167 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04675 Vivi-Chr1 99952100 99956269 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04675 1 471 Acyl Lipid Metabolism Gene Families AT1G34430 74.735 0.0 651
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04675 K00627 - gmx:100799926 653.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g04675 1 99952100 99956269 Vivi1g04675 1 99952100 99956269 ECH