Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1599 ATGAGGAGCCATGAGCAGAGGGTCTATTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGTCTTCTGTTCCTTTTGTGCTGTCTCTGTCTTCGACTCAGAAAGAAATAATGGAGAAGCTATCTCGGAGCGTCTCAGTCTGGGGAAATGAAAAGGAGCCAAACCCATGTGCATGGAAGGGAGTTTCATGCAGCTCCGACAACTCCTCAATAGCCAATCTTTCCCTCTCGGGATTGTCTCTCTCTGACTCTAGTTTTCTGCCACTTGTCTGTGAGATTGTGTCTTTGGAAGCTCTTGACCTCTCCGACAACTCTTTCAGCTCTGTTCCAGAAGGGTTCATCACTGCTTGTGGGAAGATTGATGGGTTGAAGCAGCTGAATTTCAGTAAGAACAGGTTGGTCGGTTCTTTGCCTGCTTTTAATGGCTTTGTTGGGTTAGAGTCGTTGGATTTTTCCAGTAACATGTTGAATGGAACAATTGTTTCACAGTTAGGGTCATTGAATGATCTAAAAAGATTGTACCTTACGTCCAATAATTTGAGTGGTAATGTTCCCATCAACCTTGGAAATTCCAAGGTGTTAGAGCATCTTATTCTTTCCAAGAATTCCTTCACTGGTAGTATTCCTGATGGGCTCCTAGAATATCGGAAGTTGGTTCGGATTGATTTGAGTGAAAATCAACTTTCTGGGCCTTTACCTGGGAAAATTGGAGACCTTTCCGAGCTGGAAGAGTTGACTCTGTCTTCCAATAATTTGAGTGGAGAAATCCCAATGAACCTTTCAAATTTCCAAAATCTTTTGAGATTCGCCGCGAATCAGAACAAGTTCACAGGCAATATTCCAGTTGGAATTTCAAGATCTCTCAAGAACTTGGATCTTAGTTATAATAAATTAGGTGGGCCAATTCCTGCTGACCTTTTGATGCAGTCGAATTTGCAGACAGTGGATCTTTCTTACAATCTGCTAGAGGGATCAATACCTGCAAAAATATCTCCAAACATGGTTAGGTTGAGATTAGGAAGCAATTCACTTGATGGTACTATCCCATCTGAACTTGGAACGCTACCGAAATTGACTTACTTGGAGCTGGAAAACAATAGCTTGTCGGGATCCATCCCTTCCAAGTTGGGTTCTTGCCGGAGTTTGGCGCTGTTGAATCTGGGAATGAATAACTTGACTGGCAGTCTGCCTGTGGAGTTGGCTAGTCTTAGCAGTCTTCAAGTTCTGAAGCTTCAGTCCAACAAGCTGGTTGGTGAGATCCCATATCAGATGAACCAAATGCAAAGTTTGTCCACTCTGGATATTAGTGGGAATTTGCTTAGTGGTTCAATCCCAAATTCAATTTCAAGGTTGCGGAGTCTCACCAAGTTGAACTTACAAGGCAACCTTTTCAATGGTTCAATACCTGCAACAATTGACAGCTTGAAGAATCTGTTAGAACTTCAGCTTGGAAGCAATCGACTGAATGGCCATATTCCAGGGATGCCACTTAGCTTGCAGATTGCTTTGAATCTCAGCCACAACCTCTTCGAAGGAACTATCCCTGATACTCTCTCTCGTTTGCGGGGTTTAGAAGTATTGGATCTCTCAAACAACAAATTCTCAGGTGAGATTCCAACTTCTCTGACACAAATTGGATCACTGACACAACTGCTACTTGCAAATAATCAGCTGTCTGGAGTGATTCCGGAGTTTGGAAAATATGTTACCATCATTGATACAACGGGAAATCCAAGGCTAGTTAACAGAACATTACAACGTAAATCTCCCTAG 1773 0.4241 MRSHEQRVYFFFFFFFFFFFLSSVPFVLSLSSTQKEIMEKLSRSVSVWGNEKEPNPCAWKGVSCSSDNSSIANLSLSGLSLSDSSFLPLVCEIVSLEALDLSDNSFSSVPEGFITACGKIDGLKQLNFSKNRLVGSLPAFNGFVGLESLDFSSNMLNGTIVSQLGSLNDLKRLYLTSNNLSGNVPINLGNSKVLEHLILSKNSFTGSIPDGLLEYRKLVRIDLSENQLSGPLPGKIGDLSELEELTLSSNNLSGEIPMNLSNFQNLLRFAANQNKFTGNIPVGISRSLKNLDLSYNKLGGPIPADLLMQSNLQTVDLSYNLLEGSIPAKISPNMVRLRLGSNSLDGTIPSELGTLPKLTYLELENNSLSGSIPSKLGSCRSLALLNLGMNNLTGSLPVELASLSSLQVLKLQSNKLVGEIPYQMNQMQSLSTLDISGNLLSGSIPNSISRLRSLTKLNLQGNLFNGSIPATIDSLKNLLELQLGSNRLNGHIPGMPLSLQIALNLSHNLFEGTIPDTLSRLRGLEVLDLSNNKFSGEIPTSLTQIGSLTQLLLANNQLSGVIPEFGKYVTIIDTTGNPRLVNRTLQRKSP* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1599 590 Pfam Leucine rich repeat 194 252 IPR001611 GO:0005515
Vvi18g1599 590 Pfam Leucine rich repeat 503 558 IPR001611 GO:0005515
Vvi18g1599 590 Pfam Leucine rich repeat 425 463 IPR001611 GO:0005515
Vvi18g1599 590 FunFam Phytosulfokine receptor 1 187 285 - -
Vvi18g1599 590 Gene3D Ribonuclease Inhibitor 29 184 IPR032675 -
Vvi18g1599 590 Gene3D Ribonuclease Inhibitor 185 283 IPR032675 -
Vvi18g1599 590 PRINTS Leucine-rich repeat signature 521 534 - -
Vvi18g1599 590 PRINTS Leucine-rich repeat signature 288 301 - -
Vvi18g1599 590 SUPERFAMILY RNI-like 256 564 - -
Vvi18g1599 590 SUPERFAMILY L domain-like 54 327 - -
Vvi18g1599 590 FunFam Uncharacterized protein 286 590 - -
Vvi18g1599 590 Gene3D Ribonuclease Inhibitor 284 590 IPR032675 -
Vvi18g1599 590 Pfam Leucine Rich repeat 285 300 IPR001611 GO:0005515
Vvi18g1599 590 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 15 212 - -
Vvi18g1599 590 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 32 186 - -
Vvi18g1599 590 SMART LRR_typ_2 239 263 IPR003591 -
Vvi18g1599 590 SMART LRR_typ_2 93 116 IPR003591 -
Vvi18g1599 590 SMART LRR_typ_2 355 379 IPR003591 -
Vvi18g1599 590 SMART LRR_typ_2 451 475 IPR003591 -
Vvi18g1599 590 SMART LRR_typ_2 545 567 IPR003591 -
Vvi18g1599 590 SMART LRR_typ_2 521 544 IPR003591 -
Vvi18g1599 590 SMART LRR_typ_2 403 427 IPR003591 -
Vvi18g1599 590 SMART LRR_typ_2 167 191 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1599 Vvi-Chr18 20434130 20435902 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1599 11 574 Receptor kinase-like Gene Family AT5G46330 32.107 2.39e-68 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1599 - - vvi:100264185 985.711