Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02491 ATGGCTCAGCTTCTCCAAACTCCCTTCACCCCTGGCTCCTTCGCCATCCGCCGCAACCCCATTCTCCACCGCAAAACGACATCCCCACTCGTCGTTCGGGCCAAGATCCGTGAGATTTTCATGCCCGCACTCAGCTCCACCATGACCGAGGGCAAAATCGTCTCTTGGATCAAATCCGAAGGCGACAAGCTCTCCAAGGGCGACAGCGTCGTCGTCGTTGAGTCCGACAAGGCTGACATGGACGTCGAGACATTCTATGACGGTTACCTCGCCGCCATCGTTGTCCAAGAAGGTGATGTCGCCACCGTCGGATCTCCCATCGCATTCCTTGCCGAATCAGAAGACGAGATCGATCAGGCCAAGTCCAAAGCCTCTTCTTCCTCCTCCTCTTCTCCTCCTCCTCCTCCTCCTCCTTCTGCACCTGCACCTGCTCCTGCTGTAGAATCTTCTCAACCTGAGAAGAAGGTTCTGGATAACGTGGGGCCCGTTGTGGTATCGAAGCATCCAGCATCGGAGGGAGGGAAGAGAGTGGTGGCGTCACCTTATGCGAAGAAGCTGGCAAAGGAGTTGAAGGTTGAGTTGGGGAAAATCGTGGGGACTGGACCAATGGGGAGGATTGTGGCCAAGGATGTTGAGGCATTTGCAGCTTCTTCTGCTGAGGTGGCTTCTTCTGCAACTGTTGCGGCGCCGGCTCCGGCTCCGACGTCTTCTGGGGTGCAGTTGGGACGTGTGGTGCCTTTCACTACAATGCAGAGTGCTGTGAGTAGGAACATGATTGATAGTTTGGCGGTTCCCACTTTCAGAGTTGGTTACACCATCACCACTGATGCACTTGATGCTCTCTACAAAAAGATCAAGTCAAAAGGAGTTACTATGACAGCGTTGCTTGCCAAGGCTACAGCACTTGCACTGGCTAAACACCCTGTTATAAACTCTAGTTGTAGGGATGGTAATAGCTTTACATACAATAGCAACATCAACATTGCAGTTGCTGTGGCTATAGATGGCGGACTCATTACACCGGTGCTTCCGGATGCTGATAAGGTTGATGTCTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTTGACAAGGCCCGAGCCAAGCAGCTGCAACCTCATGAATACAACACAGGTACTTTCACTCTTTCCAACCTGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTGGAGCAATAATGGCTGTTGGAACATCACAGCCAACTGTTGTGGCTACCAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAGGTCAATGTTACAGCAGATCATCGAGTAATTTATGGTGCTGATCTGGCTCAATTCTTGCAAACCCTGTCACAGATTATTGAGGACCCTAAAGATCTTACTTTCTAG 1392 0.5108 MAQLLQTPFTPGSFAIRRNPILHRKTTSPLVVRAKIREIFMPALSSTMTEGKIVSWIKSEGDKLSKGDSVVVVESDKADMDVETFYDGYLAAIVVQEGDVATVGSPIAFLAESEDEIDQAKSKASSSSSSSPPPPPPPSAPAPAPAVESSQPEKKVLDNVGPVVVSKHPASEGGKRVVASPYAKKLAKELKVELGKIVGTGPMGRIVAKDVEAFAASSAEVASSATVAAPAPAPTSSGVQLGRVVPFTTMQSAVSRNMIDSLAVPTFRVGYTITTDALDALYKKIKSKGVTMTALLAKATALALAKHPVINSSCRDGNSFTYNSNINIAVAVAIDGGLITPVLPDADKVDVYSLSRKWKELVDKARAKQLQPHEYNTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGTSQPTVVATKDGRIGMKNQMQVNVTADHRVIYGADLAQFLQTLSQIIEDPKDLTF* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02491 463 FunFam Acetyltransferase component of pyruvate dehydrogenase complex 32 135 - -
Rops6g02491 463 SUPERFAMILY Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 170 216 IPR036625 GO:0016746
Rops6g02491 463 Pfam e3 binding domain 177 212 IPR004167 GO:0016746
Rops6g02491 463 FunFam Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex 239 462 - -
Rops6g02491 463 Gene3D - 166 218 IPR036625 GO:0016746
Rops6g02491 463 Gene3D - 234 462 IPR023213 -
Rops6g02491 463 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 243 461 IPR001078 GO:0016746
Rops6g02491 463 Pfam Biotin-requiring enzyme 38 108 IPR000089 -
Rops6g02491 463 FunFam Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex 172 219 - -
Rops6g02491 463 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 61 90 IPR003016 -
Rops6g02491 463 MobiDBLite consensus disorder prediction 129 145 - -
Rops6g02491 463 MobiDBLite consensus disorder prediction 118 153 - -
Rops6g02491 463 Gene3D - 32 134 - -
Rops6g02491 463 ProSiteProfiles Peripheral subunit-binding (PSBD) domain profile. 178 215 IPR004167 GO:0016746
Rops6g02491 463 ProSiteProfiles Biotinyl/lipoyl domain profile. 36 111 IPR000089 -
Rops6g02491 463 PANTHER DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED 28 462 IPR045257 GO:0006086|GO:0045254
Rops6g02491 463 SUPERFAMILY Single hybrid motif 35 128 IPR011053 -
Rops6g02491 463 SUPERFAMILY CoA-dependent acyltransferases 231 459 - -
Rops6g02491 463 CDD lipoyl_domain 38 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02491 Rops-Chr6 45280310 45284163 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02491 1 463 Acyl Lipid Metabolism Gene Families AT1G34430 74.419 0.0 626
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02491 K00627 - gmx:100799926 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02491 6 45280310 45284163 Rops6g02491 6 45280310 45284163 ECH