Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1932 ATGATGGCTCAGCTTCTCCACACTCCCTTCATCCCTTCCTCCTCCTCCGCGCTCCGCCGCGCCGCCACCATTCCCCACCGCAAAACGACCTCTCGCCTCGTCGTTCGGGCCAAGATCCGGGAGATTTTCATGCCGGCACTGAGCTCCACCATGACCGAGGGCAAAATCGTCTCCTGGACCAAATCCGAAGGCGACAAGCTCTCCAAGGGCGACAGCGTCGTCGTCGTCGAGTCCGACAAGGCCGACATGGACGTCGAGACCTTCTACGACGGCTACCTCGCCGCCATCGTCGTCGAGGAAGGCGGCGTCGCCGCCGTCGGATCCCCCATCGCATTCCTTGCCGAGACCGAGGACGAGATTCCTCAAGCCAAGTCCAAAGCCTCTTCTTCTTCCTCTTCCTCTTCCGCACCTGCACCAGCACCAGCACCAGCACCAGCACCAGCACAAGCACCGCCAGTGGAATCTCAACCGGAAAAGGTTGCGGCGCCAGTCGCAGCTGCGGTTTCAGCTCCGGTCATTGCGTCCAGTCATCCTGCTTCGGAGGGAGGGAAGAGGACTGTTGCTTCACCTTATGCGAAGAAGCTTGCCAAGGAGTTGAAGGTGGAGTTGGGGAGGATTGTGGGGACTGGACCGATGGGGAGGATTGTGGCTAAAGATGTTGAGGCATTTGCGGCGGCAGGTAATGTTGCAGCGGCAGCACCGGCACCGGGGAAGAGTGCAGCACCTGCCGGGATGGAGTTGGGATCCGTGGTGCCTTTCACCACAATGCAGAGTGCTGTGAGTAGGAACATGCTGGAGAGTTTGGCGGTTCCCACTTTCAGAGTTGGTTACACCATCACCACGGATGCACTCGATGCCTTGTACAAGAAGATCAAGTCAAAGGGAGTCACAATGACAGCATTGCTTGCTAAGGCTACTGCACTTGCGCTGGTTAAACACCCTGTTATGAACTCTAGTTGTAGAGATGGTAATAGCTTTACATATAATAGCAGCATCAATATTGCTGTTGCTGTGGCTATAGATGGCGGATTGATTACACCAGTGCTTCAGGGTGCTGATAAGATTGATGTCTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTTGACAAGGCCAGAGCGAAGCAGCTTCAACCTCATGAATACAACACTGGTACTTTCACTCTGTCCAATCTGGGAATGTTTGGTGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTGGAGCAATAATGGCTGTTGGAGCATCGGAGCCCACTGTTGTGGCTACAAAGGATGGTCGCATTGGAATGAAGAACCAAATGCAGGTCAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCATTCTTGCAAACCCTGACCCAGATTATTGAGGACCCCAAAGATCTTACTTTCTAG 1410 0.5369 MMAQLLHTPFIPSSSSALRRAATIPHRKTTSRLVVRAKIREIFMPALSSTMTEGKIVSWTKSEGDKLSKGDSVVVVESDKADMDVETFYDGYLAAIVVEEGGVAAVGSPIAFLAETEDEIPQAKSKASSSSSSSSAPAPAPAPAPAPAQAPPVESQPEKVAAPVAAAVSAPVIASSHPASEGGKRTVASPYAKKLAKELKVELGRIVGTGPMGRIVAKDVEAFAAAGNVAAAAPAPGKSAAPAGMELGSVVPFTTMQSAVSRNMLESLAVPTFRVGYTITTDALDALYKKIKSKGVTMTALLAKATALALVKHPVMNSSCRDGNSFTYNSSINIAVAVAIDGGLITPVLQGADKIDVYSLSRKWKELVDKARAKQLQPHEYNTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGASEPTVVATKDGRIGMKNQMQVNVTADHRVIYGADLASFLQTLTQIIEDPKDLTF* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1932 469 Gene3D - 174 228 IPR036625 GO:0016746
Gso10g1932 469 Pfam e3 binding domain 187 221 IPR004167 GO:0016746
Gso10g1932 469 SUPERFAMILY Single hybrid motif 38 131 IPR011053 -
Gso10g1932 469 ProSiteProfiles Peripheral subunit-binding (PSBD) domain profile. 187 224 IPR004167 GO:0016746
Gso10g1932 469 Gene3D - 35 138 - -
Gso10g1932 469 Gene3D - 245 468 IPR023213 -
Gso10g1932 469 Pfam Biotin-requiring enzyme 41 111 IPR000089 -
Gso10g1932 469 SUPERFAMILY Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 180 225 IPR036625 GO:0016746
Gso10g1932 469 MobiDBLite consensus disorder prediction 123 137 - -
Gso10g1932 469 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 250 467 IPR001078 GO:0016746
Gso10g1932 469 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT 5 OF PYRUVATE DEHYDROGENASE COMPLEX, CHLOROPLASTIC 14 469 - -
Gso10g1932 469 SUPERFAMILY CoA-dependent acyltransferases 250 467 - -
Gso10g1932 469 ProSiteProfiles Biotinyl/lipoyl domain profile. 39 114 IPR000089 -
Gso10g1932 469 CDD lipoyl_domain 41 111 - -
Gso10g1932 469 MobiDBLite consensus disorder prediction 121 159 - -
Gso10g1932 469 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 64 93 IPR003016 -
Gso10g1932 469 MobiDBLite consensus disorder prediction 138 152 - -
Gso10g1932 469 PANTHER DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED 14 469 IPR045257 GO:0006086|GO:0045254
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1932 Gso-Chr10 46279555 46283960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1932 2 469 Acyl Lipid Metabolism Gene Families AT1G34430 77.186 0.0 660
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1932 K00627 - gmx:100786455 789.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g1932 10 46279555 46283960 Gso10g1932 10 46279555 46283960 ECH
Gso20g1424 20 44432587 44438361 Gso10g1932 10 46279555 46283960 GST