Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1598 ATGGCTGCTGCGTATTCCCTCATTTCTACATTCTTCTCCAACTCTCCTTCCCCTTCCACCGCATTTTCTCGCTCCCCAAACACAAAATCTATTTTCTCCCTCTCCAGACATCGGGTGTGCCTCCATCGGAGCCCTAATCTCACCACCTTCGCCCTCCACAACCACCACAACCATTCCTCCCAAGCCCCGCTCTCCTCCGCCCTTGATTCTCTCCTCGTCCTCTGCACCTCCGTCGCTCTCTCCTTCTCTCTCTTCGTCGCCGATGTTGACTCCGCCTCCGCATTTGTGGTCACAGCTCCCCGAAAATTGCAGAACGATGAGCTCGCTACTGTTCGGCTGTTTCAGGAGAATACGCCATCTGTTGTCTACATCACCAACCTCGCTGCCAGGCAGGATGCATTCACATTGGATGTGTTGGAAGTGCCGCAGGGGTCTGGTTCAGGTTTTGTGTGGGATAAGGATGGTCACATTGTCACAAATTATCATGTAATTCGCGGTGCATCTGATCTCAGGGTTACTCTTGCTGACCAGACAACTTATGATGCAAGAGTCGTTGGATTTGACCAAGACAAAGATGTTGCTGTTTTGCGTGTTGATGCACCAAAGGAGAAGCTGAGACCCATACCTGTTGGTGTCTCTGCAGACTTGCTTGTTGGCCAGAAAGTCTATGCTATTGGGAATCCGTTTGGACTTGATCATACTCTTACAACTGGTGTTATCAGTGGGCTTAGGAGGGAAATCAGTTCTGCTGCTACGGGCCGTCCAATTCAGGATGTTATACAGACGGATGCTGCTATTAATCCTGGTAATAGTGGAGGACCACTTCTTGATAGTTCGGGAAGCCTTATCGGGATAAATACAGCTATATATTCTCCCTCTGGTGCATCTTCTGGTGTCGGATTTTCAATTCCAGTTGACACTGTAGGTTACTGCTCAAATTTTGTTTTTTCATCATATGAACGTAGTTAG 969 0.4861 MAAAYSLISTFFSNSPSPSTAFSRSPNTKSIFSLSRHRVCLHRSPNLTTFALHNHHNHSSQAPLSSALDSLLVLCTSVALSFSLFVADVDSASAFVVTAPRKLQNDELATVRLFQENTPSVVYITNLAARQDAFTLDVLEVPQGSGSGFVWDKDGHIVTNYHVIRGASDLRVTLADQTTYDARVVGFDQDKDVAVLRVDAPKEKLRPIPVGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINPGNSGGPLLDSSGSLIGINTAIYSPSGASSGVGFSIPVDTVGYCSNFVFSSYERS* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1598 322 SUPERFAMILY Trypsin-like serine proteases 112 308 IPR009003 -
Vvi18g1598 322 Pfam Trypsin-like peptidase domain 146 285 - -
Vvi18g1598 322 FunFam Protease Do-like 1, chloroplastic 92 208 - -
Vvi18g1598 322 PRINTS HtrA/DegQ protease family signature 218 242 IPR001940 GO:0004252|GO:0006508
Vvi18g1598 322 PRINTS HtrA/DegQ protease family signature 256 273 IPR001940 GO:0004252|GO:0006508
Vvi18g1598 322 PRINTS HtrA/DegQ protease family signature 155 167 IPR001940 GO:0004252|GO:0006508
Vvi18g1598 322 PRINTS HtrA/DegQ protease family signature 278 295 IPR001940 GO:0004252|GO:0006508
Vvi18g1598 322 PRINTS HtrA/DegQ protease family signature 176 196 IPR001940 GO:0004252|GO:0006508
Vvi18g1598 322 Gene3D - 209 315 IPR043504 -
Vvi18g1598 322 Gene3D - 92 208 IPR043504 -
Vvi18g1598 322 FunFam Periplasmic serine protease DegS 209 317 - -
Vvi18g1598 322 PANTHER PEPTIDASE S12 57 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1598 Vvi-Chr18 20396978 20421389 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1598 K25895 K25894 vvi:100241896 559.681