Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1378 . . . . . . . . . . . . Arst3g01460 . . Bva07g00963 . . . . . . . . Gso12g1050 . . . . . . . . . . . . . . . . . . . . Phco9g01521 . . . . . . . . . . . . . . Vimu5g01263 . . .
Pvu11g1379 . . . Aed5g0983 . . . Aip03g01904 . . . . Arst3g02068 . . . . . . . . . . . . . . . . . . . Lapu11g01420 Lasa7g02698 . . . . Lja3g0857 . . . . . . . . . Pste1g03661 . . . Spst11g00833 . . . . . . . Vimu5g01275 . . .
Pvu11g1380 . . Adu03g01565 . . . . . . . . . Arst3g02070 . . . . Cca04g01184 . . . . . . . . . . . . . . Lapu11g01421 Lasa7g02702 . . . . Lja3g0856 . . . . Mtr4g2555 . Phco9g01522 . . Pste1g03676 Pumo11g01014 . . Spst11g00832 . . . . Tsu02g03015 . Vifa6g01620 . . . .
Pvu11g1381 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1382 . . . . . . . . . Amo13g0831 . . . . . Bva07g00959 . . . . . . . . Gso12g1053 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vimu5g01158 . . .
Pvu11g1383 . . . . . . . . . . . . . . . . . . . . . . . . Gso12g1056 . . . . . . . . Lasa7g02703 . . . . . . . . . . . . . . Pste1g03677 . . . Spst11g00831 . . . . Tsu02g03016 . . Vimu5g01259 . Vivi5g03446 .
Pvu11g1384 . . . Aed5g0938 . . . . . . . . . . . . . . . . . . . . Gso12g1058 . . . . . . . . . . . . . . . . . . . . Phco9g01523 . . . . . . . . . . . . . . Vimu5g01276 . . .
Pvu11g1385 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vimu5g01258 . . .
Pvu11g1386 . . . Aed5g0934 . . . . . Amo13g0834 . . . . . Bva07g00949 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vimu5g01278 . . .
Pvu11g1387 . . Adu03g01566 . . . . . . Amo13g2150 . . Arst3g01994 . . . . . . . . . Gma12g01179 . Gso12g1087 . . Lal2g0511 . Lan7g0528 . . Lapu11g01422 Lasa7g02704 . . . . Lja3g0855 . . . . Mtr4g2556 . Phco9g01525 . . Pste1g03681 . . . Spst11g00830 . . . . . . . Vimu5g01279 . . .
   
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Select Species Gene Chromosome Start End Strand
Arst Arst3g01460 Chr3 13138786 13139255 -
Lapu Lapu11g01422 Chr11 16959822 16961976 -
Lja Lja3g0855 Chr3 8681513 8682950 -
Aed Aed5g0983 Chr5 7626636 7627854 +
Arst Arst3g02070 Chr3 25062814 25065795 -
Arst Arst3g02068 Chr3 25011395 25013465 -
Vimu Vimu5g01258 Chr5 22615767 22617310 +
Vimu Vimu5g01259 Chr5 22634133 22635038 +
Vimu Vimu5g01263 Chr5 22666614 22668221 -
Lal Lal2g0511 Chr2 3059054 3060769 -
Vimu Vimu5g01275 Chr5 22726733 22727842 +
Pvu Pvu11g1378 Chr11 30090122 30090629 +
Arst Arst3g01460 Chr3 13138786 13139255 -
Bva Bva07g00963 Chr07 11555635 11556144 +
Gso Gso12g1050 Chr12 13816764 13817282 -
Phco Phco9g01521 Chr9 35575475 35576369 -
Vimu Vimu5g01263 Chr5 22666614 22668221 -
Pvu Pvu11g1379 Chr11 30092578 30093688 -
Aed Aed5g0983 Chr5 7626636 7627854 +
Aip Aip03g01904 Chr03 25290371 25293163 -
Arst Arst3g02068 Chr3 25011395 25013465 -
Lapu Lapu11g01420 Chr11 16928590 16930004 -
Lasa Lasa7g02698 Chr7 541150209 541151636 -
Lja Lja3g0857 Chr3 8690781 8691904 -
Pste Pste1g03661 Chr1 17552164 17553804 +
Spst Spst11g00833 Chr11 32478592 32479769 -
Vimu Vimu5g01275 Chr5 22726733 22727842 +
Pvu Pvu11g1380 Chr11 30094710 30096498 +
Adu Adu03g01565 Chr03 24705729 24707409 -
Arst Arst3g02070 Chr3 25062814 25065795 -
Cca Cca04g01184 Chr04 13693328 13694856 -
Lapu Lapu11g01421 Chr11 16952926 16953645 -
Lasa Lasa7g02702 Chr7 542015388 542016514 -
Lja Lja3g0856 Chr3 8686328 8687453 -
Mtr Mtr4g2555 Chr4 39132375 39134596 -
Phco Phco9g01522 Chr9 35609758 35610873 +
Pste Pste1g03676 Chr1 17707984 17715519 +
Pumo Pumo11g01014 Chr11 37917133 37918625 +
Spst Spst11g00832 Chr11 32474243 32475379 +
Tsu Tsu02g03015 Chr02 33322412 33324153 -
Vifa Vifa6g01620 Chr6 595484182 595485282 -
Pvu Pvu11g1381 Chr11 30129410 30130104 +
Pvu Pvu11g1382 Chr11 30570672 30571402 +
Amo Amo13g0831 Chr13 10424141 10424716 +
Bva Bva07g00959 Chr07 11548913 11549191 +
Gso Gso12g1053 Chr12 13849266 13849816 -
Vimu Vimu5g01158 Chr5 19453877 19456053 -
Pvu Pvu11g1383 Chr11 30572453 30572754 +
Gso Gso12g1056 Chr12 13897307 13898645 -
Lasa Lasa7g02703 Chr7 542072253 542073379 -
Pste Pste1g03677 Chr1 17719787 17721485 +
Spst Spst11g00831 Chr11 32460789 32461840 +
Tsu Tsu02g03016 Chr02 33351205 33351807 -
Vimu Vimu5g01259 Chr5 22634133 22635038 +
Vivi Vivi5g03446 Chr5 126374306 126375572 -
Pvu Pvu11g1384 Chr11 30576761 30577873 +
Aed Aed5g0938 Chr5 7270112 7271112 +
Gso Gso12g1058 Chr12 13904160 13905469 +
Phco Phco9g01523 Chr9 35611107 35612046 +
Vimu Vimu5g01276 Chr5 22728104 22729046 +
Pvu Pvu11g1385 Chr11 30597678 30598178 +
Vimu Vimu5g01258 Chr5 22615767 22617310 +
Pvu Pvu11g1386 Chr11 30599281 30599920 +
Aed Aed5g0934 Chr5 7192146 7192418 -
Amo Amo13g0834 Chr13 10436446 10436721 +
Bva Bva07g00949 Chr07 11517741 11518251 +
Vimu Vimu5g01278 Chr5 22749812 22750744 +
Pvu Pvu11g1387 Chr11 30600012 30601121 -
Adu Adu03g01566 Chr03 24756985 24759691 -
Amo Amo13g2150 Chr13 35551212 35553483 -
Arst Arst3g01994 Chr3 24038217 24039538 -
Gma Gma12g01179 Chr12 15068516 15069951 -
Gso Gso12g1087 Chr12 14779714 14781116 +
Lal Lal2g0511 Chr2 3059054 3060769 -
Lan Lan7g0528 Chr7 3859701 3861098 -
Lapu Lapu11g01422 Chr11 16959822 16961976 -
Lasa Lasa7g02704 Chr7 542260677 542261807 +
Lja Lja3g0855 Chr3 8681513 8682950 -
Mtr Mtr4g2556 Chr4 39141267 39142921 -
Phco Phco9g01525 Chr9 35652196 35653305 -
Pste Pste1g03681 Chr1 17785271 17796526 -
Spst Spst11g00830 Chr11 32453903 32455443 +
Vimu Vimu5g01279 Chr5 22751998 22753111 -
Lan Lan7g0528 Chr7 3859701 3861098 -