Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1087 ATGGCTTCCATTGGCAAAAAGCAGCACATTTTAGCTCTTGTGCTCCTTCTCTCAATCTGCACTTCCCAAGTAATGTCCCGCTACCTCCATGAGGCATCCATGTCCGAAAGACATGAGCAGTGGATGAAAAAATATGGAAAAGTATATAAGGATGCTGCTGAGAAGCAAAAACGTTTACTGATATTCAAGGACAATGTTGAATTCATTGAATCCTTCAATGCTGCCGGGAACAAACCTTACAAGCTTGGCATCAATCACCTTGCTGACCAAACAAATGAGGAATTTGTGGCTTCCCATAATGGATACAAACACAAGGCATCACATTCACAAACACCATTCAAGTATGAAAACGTTACTGGTGTTCCTAATGCAGTGGATTGGAGGGAAAATGGAGCTGTCACAGCAGTCAAGGACCAAGGCCAATGTGGTAGCTGCTGGGCATTTTCAACGGTTGCGGCAACAGAAGGTATCTACCAAATAACTACAAGTATGTTAATGTCCCTTTCAGAGCAAGAGTTAGTGGATTGCGACAGCGTGGATCATGGTTGTGATGGAGGTTACATGGAAGGTGGGTTTGAGTTCATTATAAAAAATGGTGGAATCAGCAGTGAGGCAAACTACCCCTACACAGCAGTTGATGGAACTTGTGACGCAAACAAAGAGGCTTCTCCTGCAGCTCAAATAAAGGGATATGAAACAGTGCCTGCTAACAGTGAGGATGCACTGCAGAAAGCTGTTGCAAACCAACCCGTGTCAGTTACCATTGATGCCGGAGGATCCGCTTTCCAGTTCTACTCAAGTGGGGTTTTCACAGGACAATGTGGGACTCAACTAGACCATGGCGTTACAGCAGTTGGTTATGGTAGCACTGATGATGGCACTCAGTATTGGATAGTGAAGAATTCATGGGGCACACAATGGGGTGAAGAAGGTTACATAAGAATGCAACGAGGCACAGATGCCCAAGAAGGCCTATGTGGCATTGCCATGGATGCCTCGTACCCAACTGCTTAG 1014 0.4527 MASIGKKQHILALVLLLSICTSQVMSRYLHEASMSERHEQWMKKYGKVYKDAAEKQKRLLIFKDNVEFIESFNAAGNKPYKLGINHLADQTNEEFVASHNGYKHKASHSQTPFKYENVTGVPNAVDWRENGAVTAVKDQGQCGSCWAFSTVAATEGIYQITTSMLMSLSEQELVDCDSVDHGCDGGYMEGGFEFIIKNGGISSEANYPYTAVDGTCDANKEASPAAQIKGYETVPANSEDALQKAVANQPVSVTIDAGGSAFQFYSSGVFTGQCGTQLDHGVTAVGYGSTDDGTQYWIVKNSWGTQWGEEGYIRMQRGTDAQEGLCGIAMDASYPTA* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1087 337 PRINTS Papain cysteine protease (C1) family signature 139 154 IPR000668 GO:0006508|GO:0008234
Gso12g1087 337 PRINTS Papain cysteine protease (C1) family signature 280 290 IPR000668 GO:0006508|GO:0008234
Gso12g1087 337 PRINTS Papain cysteine protease (C1) family signature 296 302 IPR000668 GO:0006508|GO:0008234
Gso12g1087 337 SMART pept_c1 121 336 IPR000668 GO:0006508|GO:0008234
Gso12g1087 337 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 278 288 IPR025660 -
Gso12g1087 337 CDD Peptidase_C1A 122 335 IPR039417 -
Gso12g1087 337 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 139 150 IPR000169 -
Gso12g1087 337 Gene3D Cysteine proteinases 17 337 - -
Gso12g1087 337 Pfam Papain family cysteine protease 121 336 IPR000668 GO:0006508|GO:0008234
Gso12g1087 337 SMART Inhibitor_I29_2 38 95 IPR013201 -
Gso12g1087 337 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 296 315 IPR025661 -
Gso12g1087 337 SUPERFAMILY Cysteine proteinases 29 336 IPR038765 -
Gso12g1087 337 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 20 336 - -
Gso12g1087 337 PANTHER PEPTIDASE C1A, CYSTEINE PEPTIDASE, ASPARAGINE ACTIVE SITE PROTEIN-RELATED 20 336 - -
Gso12g1087 337 Pfam Cathepsin propeptide inhibitor domain (I29) 38 95 IPR013201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1087 Gso-Chr12 14779714 14781116 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1087 - - gmx:100815212 694.886