Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03016 atgaaaCAAGAGAGTTGTTGGGCATTTTCAACGGTAGCTGCAACTGAGGGTATCAACCAAATAACAACAGGTAAACTAATCTCCCTATCAGAACAAGAACTAGTTGATTGTGATACAAAAGGTGAAGACCAAGGATGTGAAGGAGGGTTAATGGAAGATGGATTTGAGTTTATCATTAAAAATGGTGGCATCACAAGCGAAGTTAAGTACCCCTATAAAGCAACCAATGGAAGTTGTAATTCTGCAACCATTCCTATGGCTAAGATTAAAGGGTACGAGAAAGTTCCAATTAATAGCGAGGAATCACTTCTCAAAGCTGTGGCGAACCAACCAATATCGGTTTCTATTGATGCTAGTGACTCAAGTTTCATGTTTTACTCTAGTGGAATTTATACCGGAGAATGTGGAACTGAGTTAAATCATGGTGTTACTGCTGTTGGTTATGGTAGTGTTAATGGTACTGATTATTGGCTTGTGAAGAATTCATGGGGAACAATGTGGGGTGAGAAAGGATATATTAGGATGCAAAGAGGTGTGGCTGCTAAGGAAGGCTTGTGTGGTATTGCTATGGATTCTTCATATCCGactgcttcttttttttga 603 0.3831 MKQESCWAFSTVAATEGINQITTGKLISLSEQELVDCDTKGEDQGCEGGLMEDGFEFIIKNGGITSEVKYPYKATNGSCNSATIPMAKIKGYEKVPINSEESLLKAVANQPISVSIDASDSSFMFYSSGIYTGECGTELNHGVTAVGYGSVNGTDYWLVKNSWGTMWGEKGYIRMQRGVAAKEGLCGIAMDSSYPTASFF 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03016 200 CDD Peptidase_C1A 5 195 IPR039417 -
Tsu02g03016 200 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 139 149 IPR025660 -
Tsu02g03016 200 SMART pept_c1 2 196 IPR000668 GO:0006508|GO:0008234
Tsu02g03016 200 PANTHER PEPTIDASE C1A, CYSTEINE PEPTIDASE, ASPARAGINE ACTIVE SITE PROTEIN-RELATED 3 196 - -
Tsu02g03016 200 Pfam Papain family cysteine protease 5 196 IPR000668 GO:0006508|GO:0008234
Tsu02g03016 200 SUPERFAMILY Cysteine proteinases 5 197 IPR038765 -
Tsu02g03016 200 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 156 175 IPR025661 -
Tsu02g03016 200 Gene3D Cysteine proteinases 2 197 - -
Tsu02g03016 200 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 3 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03016 Tsu-Chr2 33351205 33351807 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03016 - - gmx:100818606 347.436