Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03446 ATGGTTTCCAGCACCCAAAAACAATACGTATTTGTTTTGTTCTTTATCCTTGCACTTAGTGGTATTACTAGTGTAATGTCCCGAAAGCTGCAACAATCAACATCCTTAGTAGAAAGGCACGAGCAATGGATGACAGAATATGGCAAACTATATAAAGATGATGCTGAGAAAGATCAACGTTTCATGATATTCAAAGACAATGTTGAGTTCATTGAATCATTCAATGCGGCCAACAACAAACCTTACAAACTAAGTGTTAATCACTTAGCTGATTTGACTCTTGAAGAATTTAAGGCTTCCCGTAATGGTTACAAGAAGAGGCCTACTACTAGTGAGTTAACTTCAACATCATTTAAGTATGAAGATGTCACTTCTGTGCCATCATCTGTAGATTGGAGGGTAAAAGGAGCTGTTACTCCAATCAAGGATCAAGGTCAATGTGGGAGCTGCTGGGCATTTTCAACTGTTGCTGCAACTGAAGGTATCAACCAAATAACAACAGGCAAACTAGTATCCCTCTCAGAACAAGAGCTAGTTGATTGTGACACAAAAGGTGAAGACCAAGGATGTGAAGGAGGACTAATGGAAGATGGATTCGAGTTTATCATCAAAAATGGTGGAATCACAAGTGAGACTAATTATCCTTATAAAGCAGCAGATGGAAGTTGTAACACAGCAACAACCGCTCCTGTGGCTAAGATTAAGGGATACGAGAAAGTTCCAGTGAATAGTGAGGATGCACTTCTCAAAGCTGTTGCTAATCAACCAATATCAGTTTCTATTGATGCGAGTGATTCAAGTTTCATGTTTTATTCGCATGGAATATATACAGGAGAATGTGGAACTGAGTTAGATCATGGTGTTACCGCAGTTGGTTATGGAAGTGCAAATGGAACAGATTATTGGTTGGTTAAGAATTCATGGGGAACAGTGTGGGGTGAGAAAGGATACATAAGGATGCAAAGAGGTATACCTGCTAAAGAAGGCTTGTGTGGCATTGCCATGGATTCTTCTTATCCAACTGCTTAA 1029 0.3946 MVSSTQKQYVFVLFFILALSGITSVMSRKLQQSTSLVERHEQWMTEYGKLYKDDAEKDQRFMIFKDNVEFIESFNAANNKPYKLSVNHLADLTLEEFKASRNGYKKRPTTSELTSTSFKYEDVTSVPSSVDWRVKGAVTPIKDQGQCGSCWAFSTVAATEGINQITTGKLVSLSEQELVDCDTKGEDQGCEGGLMEDGFEFIIKNGGITSETNYPYKAADGSCNTATTAPVAKIKGYEKVPVNSEDALLKAVANQPISVSIDASDSSFMFYSHGIYTGECGTELDHGVTAVGYGSANGTDYWLVKNSWGTVWGEKGYIRMQRGIPAKEGLCGIAMDSSYPTA 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03446 342 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 31 335 IPR013128 GO:0008234
Vivi5g03446 342 FunFam Senescence-specific cysteine protease SAG39 21 342 - -
Vivi5g03446 342 Gene3D Cysteine proteinases 21 342 - -
Vivi5g03446 342 Pfam Papain family cysteine protease 126 340 IPR000668 GO:0006508|GO:0008234
Vivi5g03446 342 Pfam Cathepsin propeptide inhibitor domain (I29) 40 97 IPR013201 -
Vivi5g03446 342 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 284 294 IPR025660 -
Vivi5g03446 342 SUPERFAMILY Cysteine proteinases 33 341 IPR038765 -
Vivi5g03446 342 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 301 320 IPR025661 -
Vivi5g03446 342 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 144 155 IPR000169 -
Vivi5g03446 342 PRINTS Papain cysteine protease (C1) family signature 286 296 IPR000668 GO:0006508|GO:0008234
Vivi5g03446 342 PRINTS Papain cysteine protease (C1) family signature 301 307 IPR000668 GO:0006508|GO:0008234
Vivi5g03446 342 PRINTS Papain cysteine protease (C1) family signature 144 159 IPR000668 GO:0006508|GO:0008234
Vivi5g03446 342 SMART Inhibitor_I29_2 40 97 IPR013201 -
Vivi5g03446 342 CDD Peptidase_C1A 127 340 IPR039417 -
Vivi5g03446 342 SMART pept_c1 126 341 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03446 Vivi-Chr5 126374306 126375572 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03446 - - gmx:100802616 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g03446 5 126374306 126375572 Vivi5g03446 5 126374306 126375572 ECH