Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01184 ATGAAAACTACCACATTATTAACCTTCGCTATCTTCAATCTTCTTATGATCTTGTGCAATGCATGGATAAGTGCAAGTGAATGTCCTCCAATTCACACGTATAATTCATCCAACATAGAAGCCATGAAGGTGAGGTTTGAAAGATGGATTACACAACATGGTCGAAATTACAAAGATAAAGAAGAATGGGAAGTCCGATTTGGCATTTACCAAGCAAATCTTAAGTTCATAGAGTGCAAAAACTCTCAAAATAACTCCTATAATCTCATAGACAACAAATTTGCAGATCTTACTAATGAAGAGTTTATGAGCACTTATCTCGGTTTTGGAACTAGGCTGCCTACACATACAGGAATCGGGAGTTATAAACATGGTGATCTTCCAGAAAGCatggattggagaaaggaaggagcagtaactgaaatcaaggatcaaggcaattgtggaagttgttgggcattttctgcagtggctgctgtggaaggcatcaacaaaataaaatcagggaagttggtttctctgtctgagcaagaactgatagactgtgatgtggagaatggaaaccaaggctgtgaaggtggcctaatggacacagcattcaaattcataaaaaggaatggtggcctagccactgcaaaagagtacccttatgaaggggtagatggcacatgcaacaaggaaaaagctggacaccatgcagtgaacataagtgggtatgagagggtgccatctaataatgaggctatgctcaaagctgcagtagccaatcaacctgtctctgttgcaattgatgcaggaggttatgaatttcagctttattcagaaggggttttctctggcaggtgtgggaagcatctcaatcatggtgtgactgtagttgggtatggagaggaaaatattggtgataagtattggattgtgaagaattcatggggtcttgattggggtgaatctggttatgttaggatgaaacgtgacactgttgatgatgctggaatctgtggcattgccatgcaagcaagttacccCCTCAAGAATTAA 1041 0.1412 MKTTTLLTFAIFNLLMILCNAWISASECPPIHTYNSSNIEAMKVRFERWITQHGRNYKDKEEWEVRFGIYQANLKFIECKNSQNNSYNLIDNKFADLTNEEFMSTYLGFGTRLPTHTGIGSYKHGDLPESMDWRKEGAVTEIKDQGNCGSCWAFSAVAAVEGINKIKSGKLVSLSEQELIDCDVENGNQGCEGGLMDTAFKFIKRNGGLATAKEYPYEGVDGTCNKEKAGHHAVNISGYERVPSNNEAMLKAAVANQPVSVAIDAGGYEFQLYSEGVFSGRCGKHLNHGVTVVGYGEENIGDKYWIVKNSWGLDWGESGYVRMKRDTVDDAGICGIAMQASYPLKN 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01184 346 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 145 156 IPR000169 -
Cca04g01184 346 Pfam Cathepsin propeptide inhibitor domain (I29) 46 102 IPR013201 -
Cca04g01184 346 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 304 323 IPR025661 -
Cca04g01184 346 PANTHER ERVATAMIN-B-LIKE 27 345 - -
Cca04g01184 346 Pfam Papain family cysteine protease 127 343 IPR000668 GO:0006508|GO:0008234
Cca04g01184 346 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 27 345 - -
Cca04g01184 346 PRINTS Papain cysteine protease (C1) family signature 145 160 IPR000668 GO:0006508|GO:0008234
Cca04g01184 346 PRINTS Papain cysteine protease (C1) family signature 288 298 IPR000668 GO:0006508|GO:0008234
Cca04g01184 346 PRINTS Papain cysteine protease (C1) family signature 304 310 IPR000668 GO:0006508|GO:0008234
Cca04g01184 346 SMART Inhibitor_I29_2 46 102 IPR013201 -
Cca04g01184 346 SUPERFAMILY Cysteine proteinases 42 344 IPR038765 -
Cca04g01184 346 CDD Peptidase_C1A 128 343 IPR039417 -
Cca04g01184 346 Gene3D Cysteine proteinases 31 346 - -
Cca04g01184 346 SMART pept_c1 127 344 IPR000668 GO:0006508|GO:0008234
Cca04g01184 346 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 286 296 IPR025660 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01184 Cca-Chr4 13693328 13694856 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01184 - - gmx:121173133 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01184 04 13693328 13694856 Cca04g01184 04 13693328 13694856 ECH