Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0856 ATGGCTTCCAAAACTGTACTAAACATCTCTTCATTGGCTTTGCTTCTTGTGTTTGGATTCTTGGCTTTTGAGGCAAATGCTCGTACCCTCGAAGATGTTTCATTGAAAGAGAGGCATGAGCAATGGATGACTCAGTATGGAAAAGTTTACACGGACTCTTATGAGAAAGAATTGCGGTCCAATATATTCAAAGAAAACGTTCAACGCATAGAAGCCTTTAACAATGCTGGAAACAAGCCTTACAAGCTAGGCATCAACCAATTTGCTGATCTCACAAATGAGGAATTCAAAGCCAGAAACAGATTCAAGGGTCACATGTGCTCCAATTCAACAAGGACACCAACATTCAAGTATGAAGATGTGTCTTCAGTGCCCGCTTCATTAGATTGGAGACAGAAAGGAGCTGTCACACCCATTAAGGACCAAGGCCAGTGTGGATGTTGCTGGGCATTTTCTGCCGTGGCGGCAACAGAAGGAATCACCAAGTTAAGTACCGGCAAATTGATCTCTTTATCAGAGCAAGAGCTAGTTGATTGTGACACAAAGGGCGTAGACCAAGGTTGTGAAGGGGGTCTAATGGATGATGCCTTCAAATTTATAATGCAAAACAAAGGACTAAACACAGAAGCCAAGTACCCTTATCAGGGTGTTGATGCAACTTGCAATGCAAATGTAGAAGCCAAAGATGCAGCAAGCATTAAGGGGTTTGAGGATGTCCCTGCCAACAGTGAGAGTGCATTGCTCAAAGCTGTTGCTAATCAACCCATTTCTGTGGCTATTGATGCTAGTGGATCCGAATTTCAATTTTATTCTAGTGGTCTCTTCACTGGATCCTGTGGCACTGAGTTGGATCATGGTGTCACTGCTGTGGGTTATGGAGTGAGTGATGATGGAACTAAATATTGGTTAGTCAAGAATTCATGGGGAGAACAATGGGGTGAAGAAGGATACATTAGGATGCAGAGAGATGTTGCTGCTGAAGAAGGCTTGTGCGGCATTGCAATGCAAGCTTCTTACCCCACTGCATAA 1029 0.4344 MASKTVLNISSLALLLVFGFLAFEANARTLEDVSLKERHEQWMTQYGKVYTDSYEKELRSNIFKENVQRIEAFNNAGNKPYKLGINQFADLTNEEFKARNRFKGHMCSNSTRTPTFKYEDVSSVPASLDWRQKGAVTPIKDQGQCGCCWAFSAVAATEGITKLSTGKLISLSEQELVDCDTKGVDQGCEGGLMDDAFKFIMQNKGLNTEAKYPYQGVDATCNANVEAKDAASIKGFEDVPANSESALLKAVANQPISVAIDASGSEFQFYSSGLFTGSCGTELDHGVTAVGYGVSDDGTKYWLVKNSWGEQWGEEGYIRMQRDVAAEEGLCGIAMQASYPTA* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0856 342 PRINTS Papain cysteine protease (C1) family signature 301 307 IPR000668 GO:0006508|GO:0008234
Lja3g0856 342 PRINTS Papain cysteine protease (C1) family signature 285 295 IPR000668 GO:0006508|GO:0008234
Lja3g0856 342 PRINTS Papain cysteine protease (C1) family signature 142 157 IPR000668 GO:0006508|GO:0008234
Lja3g0856 342 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 142 153 IPR000169 -
Lja3g0856 342 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 283 293 IPR025660 -
Lja3g0856 342 CDD Peptidase_C1A 125 340 IPR039417 -
Lja3g0856 342 Pfam Papain family cysteine protease 124 341 IPR000668 GO:0006508|GO:0008234
Lja3g0856 342 SUPERFAMILY Cysteine proteinases 32 341 IPR038765 -
Lja3g0856 342 Gene3D Cysteine proteinases 22 342 - -
Lja3g0856 342 Pfam Cathepsin propeptide inhibitor domain (I29) 39 96 IPR013201 -
Lja3g0856 342 PANTHER - 23 341 - -
Lja3g0856 342 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 301 320 IPR025661 -
Lja3g0856 342 SMART pept_c1 124 341 IPR000668 GO:0006508|GO:0008234
Lja3g0856 342 SMART Inhibitor_I29_2 39 96 IPR013201 -
Lja3g0856 342 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 23 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0856 Lja-Chr3 8686328 8687453 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0856 - - gmx:100778111 572.007