Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01620 ATGGCTGCTAATAGTATTGCATTCACACTCATATTCTGCTTGGGATTGTGTGCTCTCCAAGTCACTTCTCGCACCCTCCAAGACGACTCTATGTATGAGAGGCACCAACAATGGATGAGTCACTATGGCAAAGTCTATAAGGATTCTCAAGAAAGGGAGAGTCGTCTAAAGATATTCGCACAAAACGTGAAATACATTGAATCATCCAACAATGCTGACAGTAACAAATCATACAAACTAGGCATCAATCAATTTGCAGACCTCACCAACGACGAATTCACAGCTTCTAGAAACAAATTCAAGGGGCATATGTGCTCCTCAATCACAAGAACATCTACTTTTAAGTATGAAAATGCAAGTGCCGTTCCATCCACAGTTGATTGGAGGAAGAAAGGAGCAGTCACACCTGTGAAGAATCAAGGACAATGTGGATGTTGTTGGGCATTTTCTGCTGTTGCAGCAACCGAAGGAATTCATCAGTTGACTACTGGAAAATTGGTCTCTTTATCAGAGCAAGAACTTGTTGATTGTGACACAAAAGGTGTGGACCAAGGTTGTGAAGGTGGTCTTATGGATGATGCTTTCAAATTCATCATTCAAAATCATGGACTCAGCACGGAAGCTCAATACCCCTATCAAGGTGTTGATGGAACGTGCAGTGCAAACCAAGCATCCACCCAAGCGGCTACCATTACTGGGTATGAAGATGTTCCCGCCAACAATGAGCAGGCACTGCAAAAAGCTGTTGCAAATCAACCTATTTCTGTAGCCATCGATGCTAGTGGTTCTGACTTTCAATTTTACAAAAGTGGTGTCTTTACTGGTTCATGTGGAACTCAGCTGGATCATGGTGTCACAGCCGTAGGTTTTGGTATAGGCAGTGATGGAACCAAATATTGGTTGGTTAAAAACTCATGGGGAACTGATTGGGGTGAAGAAGGATACATTAGGATGCAAATGGGAGTTGATGCTGTTGAAGGACTATGTGGCATTGCAATGCAAGCATCTTATCCCACTGCTTAA 1023 0.4282 MAANSIAFTLIFCLGLCALQVTSRTLQDDSMYERHQQWMSHYGKVYKDSQERESRLKIFAQNVKYIESSNNADSNKSYKLGINQFADLTNDEFTASRNKFKGHMCSSITRTSTFKYENASAVPSTVDWRKKGAVTPVKNQGQCGCCWAFSAVAATEGIHQLTTGKLVSLSEQELVDCDTKGVDQGCEGGLMDDAFKFIIQNHGLSTEAQYPYQGVDGTCSANQASTQAATITGYEDVPANNEQALQKAVANQPISVAIDASGSDFQFYKSGVFTGSCGTQLDHGVTAVGFGIGSDGTKYWLVKNSWGTDWGEEGYIRMQMGVDAVEGLCGIAMQASYPTA 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01620 340 CDD Peptidase_C1A 123 338 IPR039417 -
Vifa6g01620 340 SMART Inhibitor_I29_2 35 93 IPR013201 -
Vifa6g01620 340 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 281 291 IPR025660 -
Vifa6g01620 340 Pfam Papain family cysteine protease 122 339 IPR000668 GO:0006508|GO:0008234
Vifa6g01620 340 FunFam Senescence-specific cysteine protease SAG39 16 340 - -
Vifa6g01620 340 PRINTS Papain cysteine protease (C1) family signature 299 305 IPR000668 GO:0006508|GO:0008234
Vifa6g01620 340 PRINTS Papain cysteine protease (C1) family signature 140 155 IPR000668 GO:0006508|GO:0008234
Vifa6g01620 340 PRINTS Papain cysteine protease (C1) family signature 283 293 IPR000668 GO:0006508|GO:0008234
Vifa6g01620 340 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 23 333 IPR013128 GO:0008234
Vifa6g01620 340 Pfam Cathepsin propeptide inhibitor domain (I29) 35 93 IPR013201 -
Vifa6g01620 340 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 299 318 IPR025661 -
Vifa6g01620 340 SMART pept_c1 122 339 IPR000668 GO:0006508|GO:0008234
Vifa6g01620 340 Gene3D Cysteine proteinases 17 340 - -
Vifa6g01620 340 SUPERFAMILY Cysteine proteinases 28 338 IPR038765 -
Vifa6g01620 340 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 140 151 IPR000169 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01620 Vifa-Chr6 595484182 595485282 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01620 - K16292 gmx:102666929 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01620 6 595484182 595485282 Vifa6g01620 6 595484182 595485282 ECH