Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1383 ATGCATGCACTGACTTCTGGAAAATTGATCTCTTTGTCAGAACAAGAACTTGTTGACTGTGACACAAAAGGTGTGGACCAAGGGTGTGAAGGTGGTTTTATGGATGATGCTTTCAAATTCATCATAAAAAATCATGGAATAAACACTGAATTTTACAAGAGTGGTGTGTTCAGTGGTTCGTGTGGAACTGAGTTGGATCACGGTGTGACTGCTGTGGGATATGGTGTTAGTGATGATGGGAGAAAGTATTGGTTGGTAAAGAACTCATGA 270 0.4037 MHALTSGKLISLSEQELVDCDTKGVDQGCEGGFMDDAFKFIIKNHGINTEFYKSGVFSGSCGTELDHGVTAVGYGVSDDGRKYWLVKNS* 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1383 89 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 65 75 IPR025660 -
Pvu11g1383 89 SMART pept_c1 2 89 IPR000668 GO:0006508|GO:0008234
Pvu11g1383 89 Pfam Papain family cysteine protease 3 50 IPR000668 GO:0006508|GO:0008234
Pvu11g1383 89 Gene3D Cysteine proteinases 1 49 - -
Pvu11g1383 89 SUPERFAMILY Cysteine proteinases 2 89 IPR038765 -
Pvu11g1383 89 Gene3D Cysteine proteinases 50 89 - -
Pvu11g1383 89 PANTHER PEPTIDASE C1A, CYSTEINE PEPTIDASE, ASPARAGINE ACTIVE SITE PROTEIN-RELATED 3 50 - -
Pvu11g1383 89 PANTHER PEPTIDASE C1A, CYSTEINE PEPTIDASE, ASPARAGINE ACTIVE SITE PROTEIN-RELATED 50 89 - -
Pvu11g1383 89 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 3 50 - -
Pvu11g1383 89 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 50 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1383 Pvu-Chr11 30572453 30572754 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1383 - - pvu:PHAVU_011G133600g 189.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1383 11 30572453 30572754 Pvu11g1383 11 30572453 30572754 ECH