Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01259 ATGGCTCGTTACGGCAAATGGTATAAGGACCCTCAAGAAAAGGAAAAGCGTTTCAGGATATTCAAGGAAAATGTGAATTACATTGAAGCCTTCAACCGTGCTGCCAATAAACCTTACAAGTTAGCCATTAATCAATTTGCAGACCTCACCAACAAGGAGTTCATAGCACCAAGAAATAGATTCAAGGGGCACATGTGTTCCTCAATCATAAGGACAACCACTTTTAAGTACGAAAATGTGACGTCAGTACCATCTACAGTGGATTGGAGACAAAAGGGTGCGGTGACACCAGTGAAGGACCAAGGCCAATGTGGATGTTGCTGGGCGTTTTCTGCTGTTGCATCAGCAGAAGGAATTCATCAATTGAGCACCGGAAAATTGATTTCTTTGTCTGAACAAGAACTTGTTGATTGTGACACAAAGGGTGTGGATCAAGGTTGTGAAGATTACCCTTTCAAGGGCGTTGACGGAACCTGCAATGCAAAGGCAGCATCTAGTCATGCAGCTACCATTAGTGGCTTCGAGGATGTCCCAGCAAACAATGAGAAGGCACTGCAAAAAGATGCTAGTGGCTCTGACTTTCAATTTTATAAGAGTGGTGTCTTCACTGGTTCATGTGGAACTGAGTTGGACCACGGTGTGACTGCTGTGGGATATGGTGTCAGCAATGATGGAACTGAGTATTGGTTGGTTAAGAACTCATGGGGAACTGAGTGGGGTGAAGAAGGCTACATCAGAATGCAAAGGGGTGTTGATTCCGAGGAAGGGCTGTGCGGCATTGCTATGCAAGCTTCTTACCCTACTGCATAG 810 0.4506 MARYGKWYKDPQEKEKRFRIFKENVNYIEAFNRAANKPYKLAINQFADLTNKEFIAPRNRFKGHMCSSIIRTTTFKYENVTSVPSTVDWRQKGAVTPVKDQGQCGCCWAFSAVASAEGIHQLSTGKLISLSEQELVDCDTKGVDQGCEDYPFKGVDGTCNAKAASSHAATISGFEDVPANNEKALQKDASGSDFQFYKSGVFTGSCGTELDHGVTAVGYGVSNDGTEYWLVKNSWGTEWGEEGYIRMQRGVDSEEGLCGIAMQASYPTA 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01259 269 SUPERFAMILY Cysteine proteinases 1 267 IPR038765 -
Vimu5g01259 269 SMART Inhibitor_I29_2 1 54 IPR013201 -
Vimu5g01259 269 PRINTS Papain cysteine protease (C1) family signature 212 222 IPR000668 GO:0006508|GO:0008234
Vimu5g01259 269 PRINTS Papain cysteine protease (C1) family signature 101 116 IPR000668 GO:0006508|GO:0008234
Vimu5g01259 269 PRINTS Papain cysteine protease (C1) family signature 228 234 IPR000668 GO:0006508|GO:0008234
Vimu5g01259 269 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 228 247 IPR025661 -
Vimu5g01259 269 CDD Peptidase_C1A 84 267 IPR039417 -
Vimu5g01259 269 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 101 112 IPR000169 -
Vimu5g01259 269 FunFam Uncharacterized protein 1 150 - -
Vimu5g01259 269 Gene3D Cysteine proteinases 149 269 - -
Vimu5g01259 269 Gene3D Cysteine proteinases 1 148 - -
Vimu5g01259 269 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 6 262 IPR013128 GO:0008234
Vimu5g01259 269 Pfam Papain family cysteine protease 149 268 IPR000668 GO:0006508|GO:0008234
Vimu5g01259 269 Pfam Papain family cysteine protease 83 148 IPR000668 GO:0006508|GO:0008234
Vimu5g01259 269 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 210 220 IPR025660 -
Vimu5g01259 269 SMART pept_c1 83 268 IPR000668 GO:0006508|GO:0008234
Vimu5g01259 269 Pfam Cathepsin propeptide inhibitor domain (I29) 1 54 IPR013201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01259 Vimu-Chr5 22634133 22635038 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01259 - K16292 gmx:102666929 502.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01259 5 22634133 22635038 Vimu5g01259 5 22634133 22635038 ECH