Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2555 ATGACTTCCCCAAACAATTTTATTATACCTATGTTTCTCATTTTCACAACATGGATGCTCCCTTATGTAATGTCTAGCAGGGTTCTTGAACCCTACTTATCAAATAAACATGAGAAATGGATGACACAATTTGGAAAATCTTACAAAGATGCTGCAGAGAAGGAAAAACGTTTTCAAATATTCAAGAATAATGTGGAGTTCATTGAATTGTTCAATGCTGTTGGAAACAAACCTTTCAACCTTAGTATTAACCATTTTGCTGACCTAACTAATGAAGAATTTAAGGCTTCACTTAATGGGAACAAGAAGTTGCATGATAAATTTGACATTTTAAATGAAACAACGTCGTTCAGGTATCACAATGTAACTTCTGTTCCAGCTTCCATGGATTGGAGGAAAAGAGGTGCCGTTACTCCTATCAAAAACCAAGGATCATGTGGTAGTTGTTGGGCATTTTCAACTGTGGCTTCCATAGAGGGTATCCACCAAATAACAACAGGTGAACTAGTGTCACTATCAGAACAAGAACTGATAGATTGTGTGAGAGGTAATAGCAGTGGATGCAGTGGTGGTTACTTAGAAGATGCATTCAAATTTATTGCAAAGAAAGGAGGAATGGCAAGTGAAACAAACTACCCTTACAAAGAAACCGACGAGAAATGTAAATTTAAGAAGGAATCAAAGCATGTAGCTGAGATTAAAGGGTATGAGAAAGTTCCTTCTAATAGTGAAAATGATCTTCTAAAAGCTGTGGCAAATCAACCTGTATCAGTTTATGTTGATGCAGGAGATTATGTATTTCAGTTTTACTCAGGTGGAATTTTTACAGGAAAATGTGGAACTGATACAGATCATGTTGTTACTATTGTTGGTTATGGTGTATCACTTGATTATACTGAGTATTGGTTAGTAAAAAATTCATGGGGTACTGGGTGGGGTGAGAAAGGGTACATGAAATTGAAGCGAAACGTTGATTCTAAAAAAGGTTTATGTGGAATTGCCACCAATCCTTCTTATCCAGTTGCTTAA 1029 0.3615 MTSPNNFIIPMFLIFTTWMLPYVMSSRVLEPYLSNKHEKWMTQFGKSYKDAAEKEKRFQIFKNNVEFIELFNAVGNKPFNLSINHFADLTNEEFKASLNGNKKLHDKFDILNETTSFRYHNVTSVPASMDWRKRGAVTPIKNQGSCGSCWAFSTVASIEGIHQITTGELVSLSEQELIDCVRGNSSGCSGGYLEDAFKFIAKKGGMASETNYPYKETDEKCKFKKESKHVAEIKGYEKVPSNSENDLLKAVANQPVSVYVDAGDYVFQFYSGGIFTGKCGTDTDHVVTIVGYGVSLDYTEYWLVKNSWGTGWGEKGYMKLKRNVDSKKGLCGIATNPSYPVA* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2555 342 PANTHER SENESCENCE-ASSOCIATED GENE 12 25 341 - -
Mtr4g2555 342 SMART Inhibitor_I29_2 37 94 IPR013201 -
Mtr4g2555 342 Pfam Cathepsin propeptide inhibitor domain (I29) 37 94 IPR013201 -
Mtr4g2555 342 CDD Peptidase_C1A 126 340 IPR039417 -
Mtr4g2555 342 Pfam Papain family cysteine protease 125 341 IPR000668 GO:0006508|GO:0008234
Mtr4g2555 342 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 301 320 IPR025661 -
Mtr4g2555 342 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 143 154 IPR000169 -
Mtr4g2555 342 SMART pept_c1 125 341 IPR000668 GO:0006508|GO:0008234
Mtr4g2555 342 Gene3D Cysteine proteinases 22 342 - -
Mtr4g2555 342 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 25 341 - -
Mtr4g2555 342 SUPERFAMILY Cysteine proteinases 30 341 IPR038765 -
Mtr4g2555 342 PRINTS Papain cysteine protease (C1) family signature 143 158 IPR000668 GO:0006508|GO:0008234
Mtr4g2555 342 PRINTS Papain cysteine protease (C1) family signature 285 295 IPR000668 GO:0006508|GO:0008234
Mtr4g2555 342 PRINTS Papain cysteine protease (C1) family signature 301 307 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2555 Mtr-Chr4 39132375 39134596 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2555 - - gmx:100817009 478.789