Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01258 ATGGGTTTCCGTTTACCTATTATCAAAAAGGCCTTATTTGCAACAAATCAAGCATCTTCGAAAGTAGTGGATGCACAAAAGGGTCACCTTGCAGTTTATGTCGGAGAGAAAATGAAGCGGTTCGTGATCCCTGTGTCATACTTGAATCAACCATCGTTCCAAGAGTTGTTGAGTAAAGCTGAGGAAGAGTTTGGATATGATCATCCAATGGGTGGCCTCACAATTCCTTGCAGTGAAGATGTCTTCTTAAAGTATGTTGGAGAGAATCAAAAGCGATTTGTGATTCCCATGTCATACCTTACTCATCCTTCATTCCAAGATCATTCCAAGACTTGTTGTGTCAAGCTGAAGAAGTGTTTGGATAAGATCATCCCATGGGTATAG 384 0.4089 MGFRLPIIKKALFATNQASSKVVDAQKGHLAVYVGEKMKRFVIPVSYLNQPSFQELLSKAEEEFGYDHPMGGLTIPCSEDVFLKYVGENQKRFVIPMSYLTHPSFQDHSKTCCVKLKKCLDKIIPWV 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01258 127 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 84 107 IPR003676 GO:0009733
Vimu5g01258 127 Pfam Auxin responsive protein 18 83 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01258 Vimu-Chr5 22615767 22617310 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01258 6 86 Calmodulin-binding Proteins AT3G43120 43.956 2.23e-17 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01258 K14488 - gmx:100820621 150.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01258 5 22615767 22617310 Vimu5g01258 5 22615767 22617310 ECH