LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst11g00832	ATGATGAGTTCATTTAGCCAAAACAACTATATTTTAGTTCTGCTCCTTGTTTTCACTTTGTGGACTTGCCATGTAATGTCTCGCAGGTTGCCTGAGGCCTTCTCGTCAGAGAGACATGAGACGTGGATGGCACAGTATGGTAAGGTCTATAAGGATGATGCTGAGAAGGAGAAACGTTTCCAAATATTCCAAAACAATGTGCAGTTCATTGAGTCTTTCAATGCTGCTGGGGGGAAATCTTTCAACCTTAGCATTAACCAATTTGCTGACCTTCATAATGAAGAATTTAAGGCTTTATTAATTAATGGTCAGAAGAAGGAACGTGGCGTGTGGACGGCAACAGAAACATCGTTTAGGTTTGACAATGTCACTAAGGTTCCTACAACCATGAACTGGAGAAAAAGAGGTGCTGTTACTCCAGTCAAGGACCAAGGCACATGTCGAAGTTGTTGGGCATTTTCAACTGTGGCAACAATTGAGGGTCTCCAGCATATAACTAAAGGTGAATTGGTGTCCCTATCAGAACAAGAACTGGTTGATTGTGTTAAAGGTGACAGCTACGGATGCAATGGTGGTTATGCGGAAGATGCCTTTGAATTTATTGCTAAGAAAGGAGGAATAGCAAGTGAAACATACTACCCCTACAAAGGAGTTAACAGGACTTGTAAGGTTAAGAAGGAAAGTCATGGTGTAGCTCAGATTAAAGGGTATGAGAAAGTTCCTGTTAATAGTGAAAAGGCACTCCTGAAGGCTGTGGCACATCAACCAGTGTCAACTTATGTTGAAGCTGGAGGATCTGCTTTCCAGTTTTACTCAAGTGGGATTTTTACAGGAAAGTGTGGAACTGACACTGACCATTCTGTTACAGTGGTTGGTTATGGAGAAGCTGGTGATGGAACCAAGTATTGGCTAGTGAAGAATTCATGGGGAACTGAATGGGGTGAGAAAGGGTATATAAGGATGAAGAGAGATATACATGCCAAGGAAGGTTTATGTGGAATTGCCACCAATGCCTTATATCCAACTGTTTGA	1032	0.4186	MMSSFSQNNYILVLLLVFTLWTCHVMSRRLPEAFSSERHETWMAQYGKVYKDDAEKEKRFQIFQNNVQFIESFNAAGGKSFNLSINQFADLHNEEFKALLINGQKKERGVWTATETSFRFDNVTKVPTTMNWRKRGAVTPVKDQGTCRSCWAFSTVATIEGLQHITKGELVSLSEQELVDCVKGDSYGCNGGYAEDAFEFIAKKGGIASETYYPYKGVNRTCKVKKESHGVAQIKGYEKVPVNSEKALLKAVAHQPVSTYVEAGGSAFQFYSSGIFTGKCGTDTDHSVTVVGYGEAGDGTKYWLVKNSWGTEWGEKGYIRMKRDIHAKEGLCGIATNALYPTV	343

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst11g00832	343	SMART	pept_c1	126	342	IPR000668	GO:0006508\|GO:0008234
	Spst11g00832	343	Pfam	Cathepsin propeptide inhibitor domain (I29)	39	96	IPR013201	-
	Spst11g00832	343	PRINTS	Papain cysteine protease (C1) family signature	302	308	IPR000668	GO:0006508\|GO:0008234
	Spst11g00832	343	PRINTS	Papain cysteine protease (C1) family signature	144	159	IPR000668	GO:0006508\|GO:0008234
	Spst11g00832	343	PRINTS	Papain cysteine protease (C1) family signature	286	296	IPR000668	GO:0006508\|GO:0008234
	Spst11g00832	343	SMART	Inhibitor_I29_2	39	96	IPR013201	-
	Spst11g00832	343	SUPERFAMILY	Cysteine proteinases	37	342	IPR038765	-
	Spst11g00832	343	ProSitePatterns	Eukaryotic thiol (cysteine) proteases asparagine active site.	302	321	IPR025661	-
	Spst11g00832	343	Gene3D	Cysteine proteinases	29	343	-	-
	Spst11g00832	343	ProSitePatterns	Eukaryotic thiol (cysteine) proteases histidine active site.	284	294	IPR025660	-
	Spst11g00832	343	FunFam	Senescence-specific cysteine protease SAG39	20	343	-	-
	Spst11g00832	343	CDD	Peptidase_C1A	127	341	IPR039417	-
	Spst11g00832	343	PANTHER	CYSTEINE PROTEASE FAMILY C1-RELATED	36	336	IPR013128	GO:0008234
	Spst11g00832	343	Pfam	Papain family cysteine protease	126	341	IPR000668	GO:0006508\|GO:0008234

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst11g00832	Spst-Chr11	32474243	32475379	Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst11g00832	-		-	gmx:100817009	587.03

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst11g00832	11	32474243	32475379	Spst11g00832	11	32474243	32475379	ECH