Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01263 ATGGGTTTTCGTTTACATGGTATCCGAAAGGCATTCTTTGCAGCAAATCAAGCATCTTCAAAAGCAGGGGATGTGCCAAAGGGTTTTCTTGCAGTCTACGTCGGAGAGAAAATGAAGCGGTTTTTAATTCCCGTATCATACTTGAATCAACCTTCATTTCAGGACTTGTTGAATCAAGCTGCGGAAGAATTTGGATATGATCATCCCAATTGTGGTCTCAGAATTCCTTGCAGTGAAGATATCTTCCTAAGAACGTTTGTTCAAATACCACACAGGAATGAGAAATCGCTTCATATTCTCTCCAACATATACTCCAAGGTAGTCCTTTGCACATCCACAGCTTTTGAAGATGTTCAGTTTGAAACAAACCGTGTCTTCCTGATTCCACGTAAACGAAAACCCATCAATGTTGTTTGTGTTGAGAAAAGACCAGTGGACAAGCTTCAAGTTTTTGAACTACAAATGTTTTACGATATGAATGATTTTGGTTGTCCCAAAGCCTTGCATCGACGAATATGTATATAA 525 0.3924 MGFRLHGIRKAFFAANQASSKAGDVPKGFLAVYVGEKMKRFLIPVSYLNQPSFQDLLNQAAEEFGYDHPNCGLRIPCSEDIFLRTFVQIPHRNEKSLHILSNIYSKVVLCTSTAFEDVQFETNRVFLIPRKRKPINVVCVEKRPVDKLQVFELQMFYDMNDFGCPKALHRRICI 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01263 174 Pfam Auxin responsive protein 16 84 IPR003676 GO:0009733
Vimu5g01263 174 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 18 85 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01263 Vimu-Chr5 22666614 22668221 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01263 17 82 Calmodulin-binding Proteins AT3G43120 46.970 2.61e-15 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01263 - K14488 gmx:100797634 141.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01263 5 22666614 22668221 Vimu5g01263 5 22666614 22668221 ECH