Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01158 ATGGTGACGAAGCCTTCGGTTAGAGCGTTATTCAATGCCGAGGTTCCAGTGGTGAGGGTTGATGTTTGTGGTGCCTGGCACCAACGTTTGGTTGCTGAACTTAAGCGATTGTGGAGCTGCTTGTTCATGGGTCTTTCCTCCAGACATCCACATCTGTTCAACCATATCAGGACTTTTGTAAATGCAAGGGTCAAATGGGTTCGAGACCCATATCTTGATAATACAGTCCTGAAAGGGAAAGATCTCAAGCAAATAATTTCTCTCAAGAACCATATTATTTCATCTCCTTCCAAATCCCTCTCTATGTATACTGCTTCTCAATTGAAAGCTTCCCTCAACCTTCCCACTACGACATCCAAATTCATTGACAAATACCATTCTGTCTTTACCCAATTTCAACCTGGTCTTGGTCTTCCTCCAGTTGTCAAACTCACACCTCAAGCCTTTTCCATCCATATAGAAGAAATGGCTGTTCATAACTCTCCTACTAATCGACAAGACACTGTTCAGAGGCTCTCAAGGCTTTTAATGCTTGCTGGCATGGCAAAATTGCCTCTTTATGTAATTGAGAAGCTAAAGTGGGATATGGGTCTTCCTCATGATTATGTGACAACCCTTTTGGCTGACTACCCTGATTATTTTAATGTTTGCGTTGTGGAAGATCCGTCATCTGGAAAAGAGGTGCTTGCTTTAGAGCTTGTTTCATGGAGAAAAGAGCTTTCTGTGTCTGAGTTAGAAATGAGGGCAAGGAGCTTGGGCATTAGTGGAGATAAAAGAAGGCATGATATTGCATTTCCCTTAATTTTTCCGAAAGGTTTTGATTTAGTAAAGAGGGTGAAGACTTGGGTTGAGAATTGGCAAAAGTTGCCTTACGTTTCACCATATGAAGATGCTTTTCATCTCGACTCAAATAGTGACCAAGCGGAGAAATGGACTGTGGCAATATTGCATGAGTTGCTTTCTCTTCTAGTGTCAAAGAAGACAGAAAGAGAAAATTTGCTTTGTTTTGGGGAGTGTTTGGGGTTGGCCTTGAGATTTAAAAAGGCTTTGGTTCATCATCCTGATATATTTTACATTTCCAATAAGATTAGGACTCAGACTGTTGTACTTAGAGAGGCTTATAGTAAGGATTTTTTGGTTAAGAAACATCCATTAGTGGTGGTACTTATGCTATTGCAGTTGTTAATAATCACATCAGGGTGGAGCGGATGTTTGTCATTCCTTGACTGGCTAAAGTTTTATGAGTTGCAAGCACAGTGA 1260 0.4087 MVTKPSVRALFNAEVPVVRVDVCGAWHQRLVAELKRLWSCLFMGLSSRHPHLFNHIRTFVNARVKWVRDPYLDNTVLKGKDLKQIISLKNHIISSPSKSLSMYTASQLKASLNLPTTTSKFIDKYHSVFTQFQPGLGLPPVVKLTPQAFSIHIEEMAVHNSPTNRQDTVQRLSRLLMLAGMAKLPLYVIEKLKWDMGLPHDYVTTLLADYPDYFNVCVVEDPSSGKEVLALELVSWRKELSVSELEMRARSLGISGDKRRHDIAFPLIFPKGFDLVKRVKTWVENWQKLPYVSPYEDAFHLDSNSDQAEKWTVAILHELLSLLVSKKTERENLLCFGECLGLALRFKKALVHHPDIFYISNKIRTQTVVLREAYSKDFLVKKHPLVVVLMLLQLLIITSGWSGCLSFLDWLKFYELQAQ 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01158 419 Pfam Plant organelle RNA recognition domain 67 388 IPR021099 GO:0003723
Vimu5g01158 419 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 58 389 IPR045040 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01158 Vimu-Chr5 19453877 19456053 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01158 - - gmx:112997648 618.231