Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2150 ATGACGATGACTACTACTTCGTTTATCCAATTTCACCAAATAATTTGTTTCTTTCTCATTCTCACTTTATGGAACTCACAAGTAACAATGTCACGCAGGCTTTTAGAGTCTGCATGCACAAGAGAGACACATGAGAAATGGATGGAAGAATATGGAAAAGTGTATAAGGATGGTGAAGAGAAAGAAAGAAGGTTCGGAATATTCAAGAACAATGTTGAGTTCATTGAGTCCTTCAATGCGGCTGGGGACAAAAGTTTCAAGCTTAGTGTTAACCGATTTGCGGACCTAAGCGTTGAAGAGTTCAAGGCTTCTCTTAATGGCCTTCCCAAGAGTAGTCATTGGCCGGGGACGACCATGGAATCCAAAACGACGCCGTTTCGGCATGAGAATGTAACTGACATTCCAGAAACCGTGGACTGGAGGAAAAGAGGAGTTGTTACACCAATCAAGGACCAAGGCACATGTGGTAGTTGGTGGGCATTTTCATCTGTGGCTGCAGTTGAAGGAATCCACAAAATAAGTACAGGTAAACTAGTGCCTCTCTCAGTGCAAGAACTAGTAGATTGCGTAAGAGGCGACACTGAAGGATGCTATGGTGGTTATATGGAAGATGCGTATACATTCATTGCAAAGAATGGAGGAATATCAAGTGAATCAGACTACCCATACAAAGAAGTTGAGAAGCCATGTAAGGCTAATGAGAAGGAAACAATACATAATGTAGCTAAGATTAAAGGGTTCGAGAAGGTTCCTTCTAATAACGAAAAGGCACTCCTCAAAGCTGTGGCAAAACAACCAGTGTCGGTTTATCTTCAAGCTAGTGGGTATTATTTTCAATTTTATTCTAGTGGGATTTTCACTGGAATATGTGAAACTGAGCCAAACCATACTGCTACGGTAGTTGGTTATGGTAAAGCTAAGGATGGTACTAAGTATTGGATAATAAAGAATTCATGGGGTACTGATTGGGGAGAGAAAGGGTACATGAGGATAGAGAGAGATATTCATGCCAAAGAAGGGTTATGCGGAATTGCCAACAATCCCTCGTATCCAATTATTTAA 1062 0.4105 MTMTTTSFIQFHQIICFFLILTLWNSQVTMSRRLLESACTRETHEKWMEEYGKVYKDGEEKERRFGIFKNNVEFIESFNAAGDKSFKLSVNRFADLSVEEFKASLNGLPKSSHWPGTTMESKTTPFRHENVTDIPETVDWRKRGVVTPIKDQGTCGSWWAFSSVAAVEGIHKISTGKLVPLSVQELVDCVRGDTEGCYGGYMEDAYTFIAKNGGISSESDYPYKEVEKPCKANEKETIHNVAKIKGFEKVPSNNEKALLKAVAKQPVSVYLQASGYYFQFYSSGIFTGICETEPNHTATVVGYGKAKDGTKYWIIKNSWGTDWGEKGYMRIERDIHAKEGLCGIANNPSYPII* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2150 353 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 312 331 IPR025661 -
Amo13g2150 353 Pfam Papain family cysteine protease 134 352 IPR000668 GO:0006508|GO:0008234
Amo13g2150 353 PANTHER SENESCENCE-ASSOCIATED GENE 12 32 352 - -
Amo13g2150 353 SUPERFAMILY Cysteine proteinases 41 352 IPR038765 -
Amo13g2150 353 CDD Peptidase_C1A 135 351 IPR039417 -
Amo13g2150 353 SMART pept_c1 134 352 IPR000668 GO:0006508|GO:0008234
Amo13g2150 353 Pfam Cathepsin propeptide inhibitor domain (I29) 44 101 IPR013201 -
Amo13g2150 353 Gene3D Cysteine proteinases 22 353 - -
Amo13g2150 353 PRINTS Papain cysteine protease (C1) family signature 152 167 IPR000668 GO:0006508|GO:0008234
Amo13g2150 353 PRINTS Papain cysteine protease (C1) family signature 312 318 IPR000668 GO:0006508|GO:0008234
Amo13g2150 353 PRINTS Papain cysteine protease (C1) family signature 296 306 IPR000668 GO:0006508|GO:0008234
Amo13g2150 353 SMART Inhibitor_I29_2 44 101 IPR013201 -
Amo13g2150 353 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 32 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2150 Amo-Chr13 35551212 35553483 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2150 - - gmx:113001896 469.929