Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1388 . . Adu03g01567 . . . Ahy3g1433 . . Amo13g2151 . . Arst3g02072 . . . . . . Dod03g1984 . . Gma12g01180 Gma06g02515 Gso12g1092 . . . . Lan7g0528 . . Lapu11g01423 Lasa7g02705 . . . . Lja3g0854 . . . . Mtr4g2557 . Phco9g01526 . . Pste1g03682 . . . Spst11g00829 . . . . Tsu02g03018 . . Vimu5g01280 . . .
Pvu11g1389 . . . Aed5g0933 . . . . . . . . Arst3g01993 . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g2997 . . . . . . Phco9g01527 . . . . . . . . . . . . . . Vimu5g01281 . . .
Pvu11g1390 Acco08g0818 Accr13g00802 . Aed5g0932 . . . . Alju10g0826 . . . . . Bisa02g3169 . . Cca04g01190 Dere07g0254 . Enph8g0530 Glsi04g0875 . . . . . . . . . . . . Lele29g0617 Lele30g0779 Lele31g0921 Lele32g0604 Lja3g2998 . . . Mibi07g0797 . . Phco9g01528 Prci6g0967 . . . . . . . Sto4g0066 . . . . . Vimu5g01282 . Vivi5g03389 .
Pvu11g1391 Acco08g0817 Accr13g00801 . Aed5g0931 . . . . Alju10g0825 . . . Arst3g01992 . Bisa02g3171 . . Cca04g01191 Dere07g0256 . Enph8g0531 Glsi04g0873 . . . . . . . . . . . . . Lele30g0780 Lele31g0922 . Lja3g2999 . . . Mibi07g0796 . . Phco9g01529 . . . . . . . . Sto4g0067 . . . . . Vimu5g01283 . Vivi5g03388 .
Pvu11g1392 . . . Aed5g0929 . . . . . . . . Arst3g01991 . . . . Cca04g01192 . . . . . . . . . Lal2g0510 . Lan7g0527 . . . . . . . . Lja3g3000 . . . . . . Phco9g01530 . . . . . Seca4g04816 . . . . . . . . Vimu5g01284 . Vivi5g03387 .
Pvu11g1393 Acco08g0810 Accr13g00797 . Aed5g0928 . . . . Alju10g0818 . . . . . Bisa02g3175 . . Cca04g01193 Dere07g0260 . Enph8g0534 Glsi04g0868 . . . . . Lal2g0509 . Lan7g0526 . . . . . . . . Lja3g3004 . . . Mibi07g0793 . . Phco9g01531 . . . Pumo11g01003 Rops3g01552 . . . Sto4g0072 . . . Vian5g00703 . Vimu5g01285 . . .
Pvu11g1394 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1395 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1396 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1397 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Lja Lja3g2997 Chr3 55603815 55608188 -
Lja Lja3g2997 Chr3 55603815 55608188 -
Lja Lja3g3000 Chr3 55768030 55775330 +
Seca Seca4g04816 Chr4 89739998 89745509 +
Lja Lja3g3004 Chr3 55870318 55874241 +
Arst Arst3g02072 Chr3 25076409 25079020 -
Vimu Vimu5g01280 Chr5 22754764 22755914 +
Lan Lan7g0528 Chr7 3859701 3861098 -
Pvu Pvu11g1388 Chr11 30602287 30603293 +
Adu Adu03g01567 Chr03 24770456 24772993 -
Ahy Ahy3g1433 Chr3 24505273 24508053 -
Amo Amo13g2151 Chr13 35593103 35597096 -
Arst Arst3g02072 Chr3 25076409 25079020 -
Dod Dod03g1984 Chr03 45101667 45103068 +
Gma Gma12g01180 Chr12 15130274 15131662 -
Gma Gma06g02515 Chr06 48083221 48084575 +
Gso Gso12g1092 Chr12 14901675 14903361 -
Lan Lan7g0528 Chr7 3859701 3861098 -
Lapu Lapu11g01423 Chr11 16978897 16980327 -
Lasa Lasa7g02705 Chr7 542306601 542307730 +
Lja Lja3g0854 Chr3 8677874 8678995 -
Mtr Mtr4g2557 Chr4 39150181 39151779 -
Phco Phco9g01526 Chr9 35654324 35655435 +
Pste Pste1g03682 Chr1 17793838 17795473 +
Spst Spst11g00829 Chr11 32444597 32446099 +
Tsu Tsu02g03018 Chr02 33364073 33365374 -
Vimu Vimu5g01280 Chr5 22754764 22755914 +
Pvu Pvu11g1389 Chr11 30603878 30608428 -
Aed Aed5g0933 Chr5 7140222 7144060 +
Arst Arst3g01993 Chr3 24034029 24038073 +
Lja Lja3g2997 Chr3 55603815 55608188 -
Phco Phco9g01527 Chr9 35659442 35663761 -
Vimu Vimu5g01281 Chr5 22762023 22766197 -
Pvu Pvu11g1390 Chr11 30669585 30671475 +
Acco Acco08g0818 Chr08 7270340 7272139 -
Accr Accr13g00802 Chr13 8934022 8936014 -
Aed Aed5g0932 Chr5 7132147 7133593 -
Alju Alju10g0826 Chr10 7264948 7266953 -
Bisa Bisa02g3169 Chr02 80200629 80202252 +
Cca Cca04g01190 Chr04 13764383 13766120 +
Dere Dere07g0254 Chr07 4898330 4899877 +
Enph Enph8g0530 Chr8 14027747 14030425 +
Glsi Glsi04g0875 Chr04 6408873 6410573 -
Lele Lele29g0617 Chr29 3771126 3782038 -
Lele Lele30g0779 Chr30 12140829 12142641 +
Lele Lele31g0921 Chr31 16617600 16619581 +
Lele Lele32g0604 Chr32 3729955 3735048 -
Lja Lja3g2998 Chr3 55743246 55744792 +
Mibi Mibi07g0797 Chr07 9843960 9846059 -
Phco Phco9g01528 Chr9 35705528 35706820 +
Prci Prci6g0967 Chr6 6665533 6667468 -
Sto Sto4g0066 Chr4 565226 566692 +
Vimu Vimu5g01282 Chr5 22793144 22794361 +
Vivi Vivi5g03389 Chr5 125358545 125359699 -
Pvu Pvu11g1391 Chr11 30672593 30678356 +
Acco Acco08g0817 Chr08 7262223 7266432 -
Accr Accr13g00801 Chr13 8928426 8932206 -
Aed Aed5g0931 Chr5 7127279 7130881 -
Alju Alju10g0825 Chr10 7259643 7263820 -
Arst Arst3g01992 Chr3 24012831 24018559 -
Bisa Bisa02g3171 Chr02 80209260 80216077 +
Cca Cca04g01191 Chr04 13770040 13787006 +
Dere Dere07g0256 Chr07 4906032 4911274 +
Enph Enph8g0531 Chr8 14031899 14037031 +
Glsi Glsi04g0873 Chr04 6398676 6404520 -
Lele Lele30g0780 Chr30 12142985 12145914 +
Lele Lele31g0922 Chr31 16620357 16626398 +
Lja Lja3g2999 Chr3 55755871 55760754 +
Mibi Mibi07g0796 Chr07 9837163 9841413 -
Phco Phco9g01529 Chr9 35708277 35717139 +
Sto Sto4g0067 Chr4 568444 571701 +
Vimu Vimu5g01283 Chr5 22795444 22800560 +
Vivi Vivi5g03388 Chr5 125345729 125347718 -
Pvu Pvu11g1392 Chr11 30683471 30688450 +
Aed Aed5g0929 Chr5 7115502 7118807 -
Arst Arst3g01991 Chr3 24005680 24009589 -
Cca Cca04g01192 Chr04 13788697 13792637 +
Lal Lal2g0510 Chr2 3053910 3057777 -
Lan Lan7g0527 Chr7 3853984 3862670 -
Lja Lja3g3000 Chr3 55768030 55775330 +
Phco Phco9g01530 Chr9 35717378 35723142 +
Seca Seca4g04816 Chr4 89739998 89745509 +
Vimu Vimu5g01284 Chr5 22802778 22806097 +
Vivi Vivi5g03387 Chr5 125333490 125336626 -
Pvu Pvu11g1393 Chr11 30736445 30739104 +
Acco Acco08g0810 Chr08 7207758 7211702 -
Accr Accr13g00797 Chr13 8883940 8887856 -
Aed Aed5g0928 Chr5 7101975 7106639 -
Alju Alju10g0818 Chr10 7191436 7194959 -
Bisa Bisa02g3175 Chr02 80300839 80305526 +
Cca Cca04g01193 Chr04 13821320 13826779 +
Dere Dere07g0260 Chr07 4936184 4940583 +
Enph Enph8g0534 Chr8 14058184 14061601 +
Glsi Glsi04g0868 Chr04 6370711 6373932 -
Lal Lal2g0509 Chr2 3045611 3048942 -
Lan Lan7g0526 Chr7 3845127 3849458 -
Lja Lja3g3004 Chr3 55870318 55874241 +
Mibi Mibi07g0793 Chr07 9802254 9806714 -
Phco Phco9g01531 Chr9 35778076 35781419 +
Pumo Pumo11g01003 Chr11 37735943 37741832 +
Rops Rops3g01552 Chr3 23657374 23660747 -
Sto Sto4g0072 Chr4 593431 598388 +
Vian Vian5g00703 Chr5 25530107 25532379 +
Vimu Vimu5g01285 Chr5 22830752 22833571 +
Pvu Pvu11g1394 Chr11 30739735 30740143 +
Pvu Pvu11g1395 Chr11 30751909 30752295 +
Pvu Pvu11g1396 Chr11 30835269 30839794 +
Pvu Pvu11g1397 Chr11 30850528 30852543 +