Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1368 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1369 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01515 . . . . . . . . . . . . . . . . . .
Pvu11g1370 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1371 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1372 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1373 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1374 . . . Aed5g0977 . . Ahy13g1694 . . . . . . . . . Car06g01929 . . . . . Gma12g01175 . . Gso6g2303 . . . . Lan8g1445 . . . . . . . Lja3g2426 . Mepo2g02793 . . Mtr4g2527 Phac11g01831 Phco9g01520 . Psa7g3773 . . . . Spst11g00858 Ssu3g2030 . . . . . . Vimu5g01275 . Vivi5g03437 .
Pvu11g1375 . . . . . . . . . . . . . . . . Car06g01927 . . . . . Gma12g01176 . . Gso6g2269 . . . . . . Lapu11g01413 Lasa7g02683 . . . . Lja3g0862 . . . . . . . . . . . . . Spst11g00835 Ssu3g2029 . . . . . . . . . .
Pvu11g1376 . . . Aed5g0978 . . Ahy13g1695 Aip03g01903 . . . . . . . . . . . . . . . . . Gso6g2260 . . . . . . Lapu11g01414 . . . . . Lja3g0860 . Mepo2g02796 . . Mtr4g2529 . . . . Pste1g03620 . . . Spst11g00834 Ssu3g2028 . . . . . . Vimu5g01264 . . .
Pvu11g1377 Acco08g0820 Accr13g00804 . . . . . . Alju10g0828 . . . . . . . . . Dere07g0248 . Enph8g0528 Glsi04g0878 . Gma06g02542 . . Lal1g0523 . . . . Lan13g0540 . . Lele29g0619 Lele30g0777 Lele31g0919 Lele32g0606 Lja3g2988 . Mepo2g02797 Mesa13g02262 Mibi07g0799 Mtr4g2530 . . Prci6g0969 . Pste1g03621 . . . . . Sto4g0064 . Trre7g02085 . . . Vimu5g01269 . . .
   
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Select Species Gene Chromosome Start End Strand
Aed Aed5g0978 Chr5 7579279 7582060 +
Aed Aed5g0977 Chr5 7566047 7568433 -
Vimu Vimu5g01264 Chr5 22670886 22672001 +
Pvu Pvu11g1368 Chr11 29801928 29803600 -
Pvu Pvu11g1369 Chr11 29806494 29807863 +
Phco Phco9g01515 Chr9 35426439 35426678 +
Pvu Pvu11g1370 Chr11 29815774 29816991 +
Pvu Pvu11g1371 Chr11 29883117 29883862 +
Pvu Pvu11g1372 Chr11 29901850 29902860 -
Pvu Pvu11g1373 Chr11 29975521 29977110 +
Pvu Pvu11g1374 Chr11 29994729 29995167 +
Aed Aed5g0977 Chr5 7566047 7568433 -
Ahy Ahy13g1694 Chr13 26275191 26277692 -
Car Car06g01929 Chr06 19262789 19264391 +
Gma Gma12g01175 Chr12 15020870 15025355 +
Gso Gso6g2303 Chr6 44370855 44372225 -
Lan Lan8g1445 Chr8 21578130 21582181 +
Lja Lja3g2426 Chr3 29809152 29811346 +
Mepo Mepo2g02793 Chr2 37671873 37672992 +
Mtr Mtr4g2527 Chr4 38837003 38838357 +
Phac Phac11g01831 Chr11 24429494 24430922 +
Phco Phco9g01520 Chr9 35573933 35575050 +
Psa Psa7g3773 Chr7 316415388 316417533 -
Spst Spst11g00858 Chr11 32730572 32731676 +
Ssu Ssu3g2030 Chr3 67167189 67170504 +
Vimu Vimu5g01275 Chr5 22726733 22727842 +
Vivi Vivi5g03437 Chr5 126206855 126207997 +
Pvu Pvu11g1375 Chr11 29995341 29995846 +
Car Car06g01927 Chr06 19250142 19251868 +
Gma Gma12g01176 Chr12 15025391 15025796 +
Gso Gso6g2269 Chr6 43833743 43835160 -
Lapu Lapu11g01413 Chr11 16633333 16634481 -
Lasa Lasa7g02683 Chr7 540425115 540426206 -
Lja Lja3g0862 Chr3 8720307 8721428 -
Spst Spst11g00835 Chr11 32491844 32493041 +
Ssu Ssu3g2029 Chr3 66981131 66982673 -
Pvu Pvu11g1376 Chr11 30038620 30039030 +
Aed Aed5g0978 Chr5 7579279 7582060 +
Ahy Ahy13g1695 Chr13 26317483 26321476 -
Aip Aip03g01903 Chr03 25242064 25243867 -
Gso Gso6g2260 Chr6 43733130 43734854 +
Lapu Lapu11g01414 Chr11 16667204 16668388 +
Lja Lja3g0860 Chr3 8708988 8710115 -
Mepo Mepo2g02796 Chr2 37689478 37690634 +
Mtr Mtr4g2529 Chr4 38848094 38849392 +
Pste Pste1g03620 Chr1 17232724 17234056 +
Spst Spst11g00834 Chr11 32488924 32489975 +
Ssu Ssu3g2028 Chr3 66977378 66978184 -
Vimu Vimu5g01264 Chr5 22670886 22672001 +
Pvu Pvu11g1377 Chr11 30046657 30047895 +
Acco Acco08g0820 Chr08 7294969 7295861 +
Accr Accr13g00804 Chr13 8988008 8988915 +
Alju Alju10g0828 Chr10 7287981 7288906 +
Dere Dere07g0248 Chr07 4830335 4831210 -
Enph Enph8g0528 Chr8 14008632 14009540 -
Glsi Glsi04g0878 Chr04 6445195 6446098 +
Gma Gma06g02542 Chr06 48438515 48439774 -
Lal Lal1g0523 Chr1 3357399 3361744 +
Lan Lan13g0540 Chr13 4109807 4111176 +
Lele Lele29g0619 Chr29 3793286 3794194 +
Lele Lele30g0777 Chr30 12122909 12123818 -
Lele Lele31g0919 Chr31 16593810 16594734 -
Lele Lele32g0606 Chr32 3751357 3752335 +
Lja Lja3g2988 Chr3 55398462 55399988 -
Mepo Mepo2g02797 Chr2 37691712 37692871 +
Mesa Mesa13g02262 Chr13 26442712 26443604 -
Mibi Mibi07g0799 Chr07 9870767 9871668 +
Mtr Mtr4g2530 Chr4 38850283 38851319 +
Prci Prci6g0969 Chr6 6689254 6690438 +
Pste Pste1g03621 Chr1 17235775 17236825 +
Sto Sto4g0064 Chr4 545901 546778 -
Trre Trre7g02085 Chr7 16518670 16519949 +
Vimu Vimu5g01269 Chr5 22686869 22687783 +
Vimu Vimu5g01275 Chr5 22726733 22727842 +
Lja Lja3g2426 Chr3 29809152 29811346 +