Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01279 ATGGCTACCAAAACACAATGCTATCACATCTCTTTGACATTGCTTTTCTGCATGGCATTCTTGGCTTTTCAAGTCACATCTCGCACTCTCCAAGATGCCTCCATGCATGAGAGGCATGAGGAATGGATGATTCGTTACGGCAAAGTTTATAAGAATCCTCAGGAAAGAGAGAAACGTTTAAAAATATTCCAAGAAAATGTAAACTACGTTGAGGCCTTCAACAATGCTGGCAATAAACCTTACAAGCTTGGTGTTAATCAATTTGCAGACCTCACAAATGAGGAGTTCATAGCAACCAGAAATAGGTTCAAGGGTCACATGTGTTCCTCTATCACAAGGACAACCTCGTTTAAGTACGAAAATGTGACTGCAGTGCCATCCTCAGTGGATTGGAGGCAAAAAGGTGCAGTTACACCAGTCAAGGACCAAGGCCAATGTGTTGCCGCAACTGAAGGAATTCATGCACTCACTGCTGGAAAATTGATCTCTTTGTCGGAACAAGAACTTGTTGATTGTGACATAAAGGGTGTGGACCAGGGTTGTGAAGGTGGCCTGATGGATGATGCTTTCAAATTCGTCATCCAAAATCACGGACTCAACACCGAAGCCAATTACCCTTATGAGGGTGTTGACGGAAAATGTAATGCGAATGCAGCAGTCAAACATGCTGCTACCATTACTGGGTACGAGGATGTCCCTGCCAACAATGAGAAGGCACTGCAGAAGGCTGTGGCTAATCAACCGGTGTCTGTAGCCATCGATGCAAGCGGCTATGACTTTCAACTTTACGAGAGTGGTGTGTTCACTGGGTCATGTGGAACTGAATTAGATCACGGTGTCACAGCTGTTGGATATGGCGTTAGTGATGATGGAACTGAGTATTGGCTTGTAAAGAACTCATGGGGAACAGAGTGGGGTGAAGAAGGTTACATTAGGATGCAAAGAGGTGTGGCTGCTCAAGAAGGACTATGTGGCATAGCTATGCAAGCTTCTTACCCTACTGCATAA 1008 0.4474 MATKTQCYHISLTLLFCMAFLAFQVTSRTLQDASMHERHEEWMIRYGKVYKNPQEREKRLKIFQENVNYVEAFNNAGNKPYKLGVNQFADLTNEEFIATRNRFKGHMCSSITRTTSFKYENVTAVPSSVDWRQKGAVTPVKDQGQCVAATEGIHALTAGKLISLSEQELVDCDIKGVDQGCEGGLMDDAFKFVIQNHGLNTEANYPYEGVDGKCNANAAVKHAATITGYEDVPANNEKALQKAVANQPVSVAIDASGYDFQLYESGVFTGSCGTELDHGVTAVGYGVSDDGTEYWLVKNSWGTEWGEEGYIRMQRGVAAQEGLCGIAMQASYPTA 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01279 335 Pfam Cathepsin propeptide inhibitor domain (I29) 39 96 IPR013201 -
Vimu5g01279 335 CDD Peptidase_C1A 126 333 IPR039417 -
Vimu5g01279 335 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 294 313 IPR025661 -
Vimu5g01279 335 SMART pept_c1 125 334 IPR000668 GO:0006508|GO:0008234
Vimu5g01279 335 Pfam Papain family cysteine protease 125 334 IPR000668 GO:0006508|GO:0008234
Vimu5g01279 335 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 276 286 IPR025660 -
Vimu5g01279 335 SMART Inhibitor_I29_2 39 96 IPR013201 -
Vimu5g01279 335 SUPERFAMILY Cysteine proteinases 33 333 IPR038765 -
Vimu5g01279 335 Gene3D Cysteine proteinases 19 335 - -
Vimu5g01279 335 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 28 328 IPR013128 GO:0008234
Vimu5g01279 335 FunFam Senescence-specific cysteine protease SAG39 20 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01279 Vimu-Chr5 22751998 22753111 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01279 - K16292 gmx:102666929 611.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01279 5 22751998 22753111 Vimu5g01279 5 22751998 22753111 ECH