Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01278 ATGGTTTTTCGTTTACCTGGAATCAGAAAGGCAATATCAGTAGGAAATCAAGCATCTTCAAAAGCAGTTGATGCACAAAAGGGCTATCTTGCTGTGTATGTGGGAGAGAAAATGAAGCGATTTGTGATCCCTGTATCATACTTGAACAAACCTTCCTTCCAAGACTTGTTAAGTAAAGCTGAGGAAGAGTTTGGATATGATCATCCAATGGGTGGCCTCACAATTCCTTGCAGGATTAAGGATCACATGGTGTTGTCTCACAGGTCTCTCTCAAGGATTAGGAAGTTCACTGCTAGTTCATATTCACCTTTTGAGATTGCTGCCAACAAATTACGCACCTGA 342 0.4123 MVFRLPGIRKAISVGNQASSKAVDAQKGYLAVYVGEKMKRFVIPVSYLNKPSFQDLLSKAEEEFGYDHPMGGLTIPCRIKDHMVLSHRSLSRIRKFTASSYSPFEIAANKLRT 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01278 113 Pfam Auxin responsive protein 12 78 IPR003676 GO:0009733
Vimu5g01278 113 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 19 80 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01278 Vimu-Chr5 22749812 22750744 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01278 17 80 Calmodulin-binding Proteins AT3G43120 51.562 2.47e-18 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01278 K14488 - gmx:100797634 141.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01278 5 22749812 22750744 Vimu5g01278 5 22749812 22750744 ECH