Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2556 ATGGTTTCCACTAGCAAAAACCAATACATATTGGCTCTGTTCCTCCTCCTTGCAGTTGCTGGTATTACCAATGTCATGTCCCGAAAACTGTACGAGTCACTGTCTTTACAAGAAAGACACGAACAATGGATGACAGAACATGGCAAAGTGTACGAAGATGCTATTGAGAAAGAAAAACGTTTCATGATATTCAAAGACAATGTTGAGTTCATTGAATCATTCAATGCAGCTGATAATCAACCTTACAAGCTAAGTGTTAATCACCTAGCTGATTTGACTCTTGATGAATTTAAGGCTTCCCGTAATGGTTACAAGAAGATTGATCGTGAGTTTACTACAACATCATTTAAGTATGAAAATGTTACTGCTATTCCAGCAGCTGTAGATTGGAGAGTAAAAGGAGCTGTCACTCCAATCAAGGACCAAGGTCAATGTGGGAGCTGCTGGGCATTTTCAACGGTGGCTGCAACCGAGGGTATCAACCAAATAACTACAGGCAAACTAGTCTCCCTCTCAGAACAAGAGCTAGTAGATTGTGACACAAAAGGTGAAGACCAAGGATGCGAAGGAGGATTAATGGAAGATGGATTTGAATTTATCATTAAAAATGGTGGAATTACAAGTGAGACTAATTACCCTTATAAAGCAGCGGATGGAAGTTGTAACACTGCAACAACCACTCCTGTGGCTAAGATTACAGGATATGAGAAAGTTCCAGTTAATAGTGAGAAATCACTTCTCAAAGCTGTGGCGAACCAACCAATATCAGTTTCCATTGATGCTAGTGACTCAAGTTTCATGTTTTACTCAAGTGGAATTTATACAGGAGAATGTGGAACTGAGCTAGATCATGGTGTCACTGCTGTTGGATATGGTAGTGCTAATGGTACTGATTATTGGATTGTGAAGAATTCATGGGGCACTGTGTGGGGTGAAAAAGGGTACATAAGGATGCAAAGAGGTATAGCTGCTAAGGAAGGCTTATGTGGTATTGCCATGGATTCTTCTTATCCAACTGCTTAA 1023 0.4018 MVSTSKNQYILALFLLLAVAGITNVMSRKLYESLSLQERHEQWMTEHGKVYEDAIEKEKRFMIFKDNVEFIESFNAADNQPYKLSVNHLADLTLDEFKASRNGYKKIDREFTTTSFKYENVTAIPAAVDWRVKGAVTPIKDQGQCGSCWAFSTVAATEGINQITTGKLVSLSEQELVDCDTKGEDQGCEGGLMEDGFEFIIKNGGITSETNYPYKAADGSCNTATTTPVAKITGYEKVPVNSEKSLLKAVANQPISVSIDASDSSFMFYSSGIYTGECGTELDHGVTAVGYGSANGTDYWIVKNSWGTVWGEKGYIRMQRGIAAKEGLCGIAMDSSYPTA* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2556 340 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 282 292 IPR025660 -
Mtr4g2556 340 PANTHER SENESCENCE-ASSOCIATED GENE 12 29 339 - -
Mtr4g2556 340 Pfam Papain family cysteine protease 124 338 IPR000668 GO:0006508|GO:0008234
Mtr4g2556 340 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 142 153 IPR000169 -
Mtr4g2556 340 PRINTS Papain cysteine protease (C1) family signature 142 157 IPR000668 GO:0006508|GO:0008234
Mtr4g2556 340 PRINTS Papain cysteine protease (C1) family signature 284 294 IPR000668 GO:0006508|GO:0008234
Mtr4g2556 340 PRINTS Papain cysteine protease (C1) family signature 299 305 IPR000668 GO:0006508|GO:0008234
Mtr4g2556 340 Gene3D Cysteine proteinases 18 340 - -
Mtr4g2556 340 SMART pept_c1 124 339 IPR000668 GO:0006508|GO:0008234
Mtr4g2556 340 CDD Peptidase_C1A 125 338 IPR039417 -
Mtr4g2556 340 SUPERFAMILY Cysteine proteinases 32 339 IPR038765 -
Mtr4g2556 340 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 299 318 IPR025661 -
Mtr4g2556 340 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 29 339 - -
Mtr4g2556 340 Pfam Cathepsin propeptide inhibitor domain (I29) 40 97 IPR013201 -
Mtr4g2556 340 SMART Inhibitor_I29_2 40 97 IPR013201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2556 Mtr-Chr4 39141267 39142921 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2556 - - gmx:100802616 565.844