Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01904 ATGGCTCCAATTAGCAAAAACGTGCATGTTTTATTGGCTCTAATGCTCGTTATTCTTACAATTTGCACTTCCCATGTAATTTCCTCTCGAAAGCTCAATAATGAACCATCATCGTCAATGTACCAAAGACATGAGCAATGGATGTTAAAATATGGCATAGTGTACAAGAATGGTGAGGAGAAGGAGAAACGTTTCTTGATATTCAAGGACAACGTGGAATTGATCGAGTCATTTAATGCTGCTGGGAACAAGGCTTACAAGCTTGGTGTTAATCACTTAGCTGATCTTACCAATGAGGAATTCAAGGCTTCACGTAATGGATACATGAGATCAAATAATTCACCTCCAACACCATTCAAGTATGAAAATGTCACTGATGTTCCAAATGCAATTGACTGGAGGCACAATGGAGCTGTTACTCCAGTCAAGAACCAAGGCAGTTGCGGATGTTGTTGGGCATTTTCAACCGTTGCTGCAACCGAAGGCATCCACCAGATTACTACAGGAAACCTTGTGTCCCTCTCAGAGCAAGAGCTTGTGGACTGTGATAACGTGGATCAAGGTTGCGAGGGAGGTCTCATGGAAAATGGCTTTGAATTCATCATAAAAAATGGTGGAATCACCACTGAGTCAAACTACCCTTACAAAGGAGTTGATGAAACTTGTGACACAAGTAAAGAGGCTTCTCCAGCAGCTCAGATAAAAGGGTACCAGCGGGTGCCTGCAAACAGCGAGCACGCACTTCAACAAGCCGTGGCGAACCAACCGGTTTCTGTTTCCATTGATGCTAGTGGATCTGCTTTCCAATTCTACTCGAGTGGCGTCTTCACCGGTGAATGTGGGACTCAACTTGACCATGGTGTTACTGCAGTTGGTTACGGTGCAGATGATGATGGTACTGAGTATTGGATAGTAAAAAATTCTTGGGGCACACAATGGGGCGAGGATGGTTACATAAGAATGAAGAAGGGAATAGATGCTACTCAAGGGTTGTGTGGCATTGCTATGGATGCCTCTTATCCCACTGCTTAA 1032 0.438 MAPISKNVHVLLALMLVILTICTSHVISSRKLNNEPSSSMYQRHEQWMLKYGIVYKNGEEKEKRFLIFKDNVELIESFNAAGNKAYKLGVNHLADLTNEEFKASRNGYMRSNNSPPTPFKYENVTDVPNAIDWRHNGAVTPVKNQGSCGCCWAFSTVAATEGIHQITTGNLVSLSEQELVDCDNVDQGCEGGLMENGFEFIIKNGGITTESNYPYKGVDETCDTSKEASPAAQIKGYQRVPANSEHALQQAVANQPVSVSIDASGSAFQFYSSGVFTGECGTQLDHGVTAVGYGADDDGTEYWIVKNSWGTQWGEDGYIRMKKGIDATQGLCGIAMDASYPTA 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01904 343 PRINTS Papain cysteine protease (C1) family signature 145 160 IPR000668 GO:0006508|GO:0008234
Aip03g01904 343 PRINTS Papain cysteine protease (C1) family signature 286 296 IPR000668 GO:0006508|GO:0008234
Aip03g01904 343 PRINTS Papain cysteine protease (C1) family signature 302 308 IPR000668 GO:0006508|GO:0008234
Aip03g01904 343 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 36 342 - -
Aip03g01904 343 PANTHER PEPTIDASE C1A, CYSTEINE PEPTIDASE, ASPARAGINE ACTIVE SITE PROTEIN-RELATED 36 342 - -
Aip03g01904 343 SMART pept_c1 127 342 IPR000668 GO:0006508|GO:0008234
Aip03g01904 343 SMART Inhibitor_I29_2 44 101 IPR013201 -
Aip03g01904 343 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 284 294 IPR025660 -
Aip03g01904 343 Gene3D Cysteine proteinases 25 343 - -
Aip03g01904 343 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 145 156 IPR000169 -
Aip03g01904 343 CDD Peptidase_C1A 128 341 IPR039417 -
Aip03g01904 343 Pfam Cathepsin propeptide inhibitor domain (I29) 44 101 IPR013201 -
Aip03g01904 343 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 302 321 IPR025661 -
Aip03g01904 343 Pfam Papain family cysteine protease 127 342 IPR000668 GO:0006508|GO:0008234
Aip03g01904 343 SUPERFAMILY Cysteine proteinases 38 342 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01904 Aip-Chr3 25290371 25293163 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01904 - - gmx:100815212 528.865