Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu9g2018 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa1g04325 . . . . . . . . . . . Phco7g02336 . . . . . . . Ssu1g1959 . . . . . . . . Vivi4g01448 Vra3g1145
Pvu9g2019 Acco13g0954 Accr12g00917 . . . . . . Alju13g1202 . . . . Bach2g01774 Bisa02g0425 Bva06g00940 Car01g01487 . Dere14g0185 . Enph5g0767 Glsi13g0903 . Gma06g02028 . Gso6g1886 . . . . . . . Lasa1g04321 Lele17g0751 Lele18g0774 Lele19g0809 Lele20g0647 . . . . Mibi13g0923 Mtr2g1927 . Phco7g02337 Prci9g1217 . Pste2g00661 . . . . . Sto12g1147 . . Tsu03g02770 . . Vimu10g00928 . Vivi4g01461 Vra3g1148
Pvu9g2020 . . . . . . . . . . . . . . . . . . . Dod09g0597 . . . Gma06g02027 . Gso6g1885 . . . . . . . Lasa1g04320 . . . . . Mal4g2427 . . . Mtr2g1928 . Phco7g02338 . . Pste2g00662 . . . . . . . . Tsu03g02768 . . . . Vivi4g01464 Vra3g1149
Pvu9g2021 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu9g2022 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g02339 . . . . . . . . . . . . . . . . . .
Pvu9g2023 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vra3g1150
Pvu9g2024 Acco13g1095 . . Aed10g1334 . . . . . . . Apr1g2615 . Bach2g01679 . Bva06g00823 . . . . . . . . . . . . . . . . . . . . . . Lja6g1703 . . . . . . Phco7g02342 . . . . . . Spst9g02593 Ssu1g1858 Sto12g1273 . . . . . Vimu10g00912 . . Vra3g1154
Pvu9g2025 Acco13g1099 Accr12g01067 . Aed10g1309 . . . . Alju13g1062 . . Apr1g2619 . . Bisa02g0272 . . . Dere14g0039 . . Glsi13g0759 . Gma06g02026 . Gso6g1884 . . . . . . . . Lele17g0639 Lele18g0880 Lele19g0911 Lele20g0537 . . . . Mibi13g1052 . . Phco7g02345 Prci9g1041 . Pste2g00664 . . . Spst9g02591 Ssu1g1870 Sto12g1275 . . . . . Vimu10g00910 . . Vra3g1159
Pvu9g2026 . . . . . . . . . . . . . . . Bva06g00806 Car01g01562 . . . . . . . . . . Lal21g1100 . . . . . Lasa1g04264 . . . . . Mal4g2352 Mepo6g02279 Mesa5g02237 . Mtr2g2009 . Phco7g02346 . . . . . . Spst9g02579 Ssu1g1878 . . . . . . Vimu10g00909 . . Vra3g1160
Pvu9g2027 Acco13g0951 Accr12g00915 . . . . . . Alju13g1205 . . . . Bach2g01646 Bisa02g0430 Bva06g00783 Car01g01491 . Dere14g0191 . Enph5g0764 Glsi13g0906 . Gma06g02022 . . . . . . . Lan3g0814 . . Lele17g0756 Lele18g0771 Lele19g0807 Lele20g0649 . . . . Mibi13g0921 . . Phco7g02347 Prci9g1221 . Pste2g00690 . . . Spst9g02578 . Sto12g1140 . . . . . Vimu10g00908 . . Vra3g1161
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Pvu Pvu9g2018 Chr9 28945854 28949453 -
Lasa Lasa1g04325 Chr1 726007219 726024085 -
Phco Phco7g02336 Chr7 41029654 41039791 -
Ssu Ssu1g1959 Chr1 54868927 54872783 -
Vivi Vivi4g01448 Chr4 53744899 53755040 +
Vra Vra3g1145 Chr3 12056370 12071917 -
Pvu Pvu9g2019 Chr9 28954035 28956376 +
Acco Acco13g0954 Chr13 7667831 7670094 -
Accr Accr12g00917 Chr12 9417719 9420066 -
Alju Alju13g1202 Chr13 30699161 30702052 +
Bach Bach2g01774 Chr2 26031720 26033452 +
Bisa Bisa02g0425 Chr02 7129206 7131281 +
Bva Bva06g00940 Chr06 7937881 7940004 +
Car Car01g01487 Chr01 26429826 26433096 -
Dere Dere14g0185 Chr14 1906799 1909018 +
Enph Enph5g0767 Chr5 6302956 6305781 -
Glsi Glsi13g0903 Chr13 27350680 27356140 +
Gma Gma06g02028 Chr06 29382092 29385848 -
Gso Gso6g1886 Chr6 27667860 27671313 -
Lasa Lasa1g04321 Chr1 725495943 725499393 -
Lele Lele17g0751 Chr17 19124164 19127279 +
Lele Lele18g0774 Chr18 4829126 4832339 -
Lele Lele19g0809 Chr19 4878685 4881184 -
Lele Lele20g0647 Chr20 13673706 13676524 +
Mibi Mibi13g0923 Chr13 11856723 11859592 -
Mtr Mtr2g1927 Chr2 25087403 25094230 +
Phco Phco7g02337 Chr7 41049724 41051809 +
Prci Prci9g1217 Chr9 26110372 26113147 +
Pste Pste2g00661 Chr2 6870894 6876570 +
Sto Sto12g1147 Chr12 7242945 7245634 -
Tsu Tsu03g02770 Chr03 37005430 37010141 -
Vimu Vimu10g00928 Chr10 8341479 8347905 +
Vivi Vivi4g01461 Chr4 54482396 54486817 +
Vra Vra3g1148 Chr3 12093823 12096737 +
Pvu Pvu9g2020 Chr9 28956505 28975235 -
Dod Dod09g0597 Chr09 9841553 9866175 +
Gma Gma06g02027 Chr06 29363778 29381226 +
Gso Gso6g1885 Chr6 27649137 27667708 +
Lasa Lasa1g04320 Chr1 725459455 725471871 +
Mal Mal4g2427 Chr4 62451727 62472214 +
Mtr Mtr2g1928 Chr2 25095939 25107661 -
Phco Phco7g02338 Chr7 41052459 41075903 -
Pste Pste2g00662 Chr2 6876799 6900752 -
Tsu Tsu03g02768 Chr03 36985002 36999297 +
Vivi Vivi4g01464 Chr4 54632947 54644611 +
Vra Vra3g1149 Chr3 12096886 12113237 -
Pvu Pvu9g2021 Chr9 28962212 28962480 +
Pvu Pvu9g2022 Chr9 28975965 28976851 -
Phco Phco7g02339 Chr7 41076148 41078846 -
Pvu Pvu9g2023 Chr9 28996271 28998838 -
Vra Vra3g1150 Chr3 12118426 12121479 -
Pvu Pvu9g2024 Chr9 29033993 29040566 +
Acco Acco13g1095 Chr13 8963029 8967402 -
Aed Aed10g1334 Chr10 15624931 15628629 -
Apr Apr1g2615 Chr1 35558794 35562520 -
Bach Bach2g01679 Chr2 25370642 25374350 -
Bva Bva06g00823 Chr06 7391872 7396232 -
Lja Lja6g1703 Chr6 44124594 44128542 +
Phco Phco7g02342 Chr7 41106509 41112971 +
Spst Spst9g02593 Chr9 59886756 59916808 -
Ssu Ssu1g1858 Chr1 47804518 47819448 +
Sto Sto12g1273 Chr12 8210319 8213602 -
Vimu Vimu10g00912 Chr10 8152102 8157017 -
Vra Vra3g1154 Chr3 12181329 12186538 +
Pvu Pvu9g2025 Chr9 29048801 29052249 -
Acco Acco13g1099 Chr13 9012065 9015990 -
Accr Accr12g01067 Chr12 11303031 11306971 -
Aed Aed10g1309 Chr10 14480336 14483410 -
Alju Alju13g1062 Chr13 29454807 29458787 +
Apr Apr1g2619 Chr1 35582132 35585242 -
Bisa Bisa02g0272 Chr02 4885167 4889331 +
Dere Dere14g0039 Chr14 463521 467560 +
Glsi Glsi13g0759 Chr13 26396406 26405139 +
Gma Gma06g02026 Chr06 29325079 29328359 -
Gso Gso6g1884 Chr6 27612480 27616311 -
Lele Lele17g0639 Chr17 18403782 18406963 +
Lele Lele18g0880 Chr18 5538422 5541736 -
Lele Lele19g0911 Chr19 5528334 5531511 -
Lele Lele20g0537 Chr20 12996347 12999672 +
Mibi Mibi13g1052 Chr13 13442876 13446647 -
Phco Phco7g02345 Chr7 41150554 41153438 -
Prci Prci9g1041 Chr9 25090177 25094605 +
Pste Pste2g00664 Chr2 6916137 6919669 +
Spst Spst9g02591 Chr9 59873678 59876458 +
Ssu Ssu1g1870 Chr1 48750462 48755450 -
Sto Sto12g1275 Chr12 8225140 8228792 -
Vimu Vimu10g00910 Chr10 8131585 8134426 +
Vra Vra3g1159 Chr3 12218099 12221349 -
Pvu Pvu9g2026 Chr9 29057181 29059889 -
Bva Bva06g00806 Chr06 7313719 7316806 -
Car Car01g01562 Chr01 32755041 32757219 -
Lal Lal21g1100 Chr21 13457052 13459091 -
Lasa Lasa1g04264 Chr1 720765392 720766822 +
Mal Mal4g2352 Chr4 58817813 58819252 +
Mepo Mepo6g02279 Chr6 29994686 29996215 +
Mesa Mesa5g02237 Chr5 36601245 36602788 +
Mtr Mtr2g2009 Chr2 29289276 29292076 -
Phco Phco7g02346 Chr7 41158868 41160594 -
Spst Spst9g02579 Chr9 59755537 59757151 -
Ssu Ssu1g1878 Chr1 49328399 49330068 +
Vimu Vimu10g00909 Chr10 8112757 8114235 +
Vra Vra3g1160 Chr3 12242681 12245952 -
Pvu Pvu9g2027 Chr9 29071120 29081157 +
Acco Acco13g0951 Chr13 7626258 7630377 -
Accr Accr12g00915 Chr12 9376440 9380598 -
Alju Alju13g1205 Chr13 30732465 30736597 +
Bach Bach2g01646 Chr2 25155170 25158701 -
Bisa Bisa02g0430 Chr02 7258233 7262825 +
Bva Bva06g00783 Chr06 7192198 7196728 -
Car Car01g01491 Chr01 26606101 26620485 -
Dere Dere14g0191 Chr14 1954745 1959217 +
Enph Enph5g0764 Chr5 6272014 6278050 -
Glsi Glsi13g0906 Chr13 27371210 27379945 +
Gma Gma06g02022 Chr06 29143261 29156262 +
Lan Lan3g0814 Chr3 15261005 15269071 +
Lele Lele17g0756 Chr17 19149428 19153535 +
Lele Lele18g0771 Chr18 4805947 4810218 -
Lele Lele19g0807 Chr19 4847620 4851703 -
Lele Lele20g0649 Chr20 13694849 13699128 +
Mibi Mibi13g0921 Chr13 11811178 11815656 -
Phco Phco7g02347 Chr7 41164383 41177115 +
Prci Prci9g1221 Chr9 26144676 26150616 +
Pste Pste2g00690 Chr2 7172328 7175745 +
Spst Spst9g02578 Chr9 59742894 59753825 +
Sto Sto12g1140 Chr12 7193970 7199033 -
Vimu Vimu10g00908 Chr10 8102019 8105683 -
Vra Vra3g1161 Chr3 12251616 12264735 +