Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00909 ATGGCAGAAAGTATGAGGTGTTCTTCTATGATATCTCGTAGTAAAAGCGATCAAATAGCAATGAAGGAGACACTTCGTGCCCAGCAGCAACTTCTGGAAAAGCTATATGCTGAGTTGGATGAGGAAAGAGAAGCTTCAGCTACTGCAACGAGTGAAGCATTGGACATGATACTGCGTTTGCAGGGAGAGAAGGCTGTGGTGAAGATGGAGGCCAGTCACTACAAGAGAGTGGCAGAAGAGAAGATAGACCATGCTGAGGCCTCTCTGGAGGCTTTTGAGGAACTTATGTATCAGAAGGAAATGTTAATTGTGTCTCTCGAATTTCAAGTCCAGGCTTATAGACACAAACTTATGAGCTTGGGGTGTGATCTTAGTGCTAATGAGTTTGAGTTCCAAGAGGATCTCCTTCTGAATAGAAGTGATAAAAGAAATGGAGAAAATGGGGGTCAGAGTAGCACTGTTAGAAGGCTTCATTCAATGCCTGCAATTCAGTTTCTGAGTTCCCTGAGAGCTGCTACCAGGGAAAGATCACCTAGTCCAGTTCTTGATGTGATTCCTAAGATAATAGAGGAGGAGAGTACTGACAAGGAAGTAGCTCAATCTGGCTTGGATTTGACAAGAAAGGCAGTTGAATTTTCAGGTGGTAGTGGAACTCTTGATTCTTATTTGAACCAGATAAAGGAGTTGAATGAACAAGTGAAGATCATTTCAGATTGTGCTGAAGGAGAAAAGAGTGCAAATTTGAGTAGTAGAAGAGGGAGGTCCTATTCAATTTTATCGCAGGCTAGCATTGATCAAGTTAGTCAAAGTGAAAGTACACATAATGGAGGAGTTGCTAATGATTCTCCTTGTTTGCATAATGTCTATGATGTATATGAAGTCCCACAAACTAGTGAAAAGCATGAGAAATGGAATTTGGATGCAGAGAACAGATTAAGAAAACCAGATTCTGAATATCAGGGAATGGTTGAAAAACCTGTTAAACTTGGCGCAGCAGAAAAGAGAAAGAGTATGTTTAAAGTGTATAGTGAAATAAAAACTCCTTTTCCTACACTTATGATGACAGGCAATGACCATAAAAAAGAAGGGATGAATGAAGTTTACAATTCTCAAGCTGAGTTTCGTAAGCTGAATCAGAGAATTGAGAGGCTTGAGAAGGAGAGAATTACTGCAAAGCAAGAGATTACCCGTGAAGGGAATGATGAAGAACAGTTGAGACTGTTAAAGGACATACAAAGTCAACTCCAATCAATACAATCAGAGATGAGAGACTTGAAATCCAAAAAAGCTGCTCCTAAGGACAACCTGTCTTTGGCTTCTCTCCAAGAGGTAGTTAGAAATTCCTGTTATTTTCCCTTGACTTTTGAGAGGAACAAGAAATACTATATTGCTGGACTGAATCTTTCATGTCTTTCTTTGATTCTTTGTGGTGTACACTTTACATTTAGTATCAGTTTGAATGTGATGATCATGGGGTAG 1479 0.3982 MAESMRCSSMISRSKSDQIAMKETLRAQQQLLEKLYAELDEEREASATATSEALDMILRLQGEKAVVKMEASHYKRVAEEKIDHAEASLEAFEELMYQKEMLIVSLEFQVQAYRHKLMSLGCDLSANEFEFQEDLLLNRSDKRNGENGGQSSTVRRLHSMPAIQFLSSLRAATRERSPSPVLDVIPKIIEEESTDKEVAQSGLDLTRKAVEFSGGSGTLDSYLNQIKELNEQVKIISDCAEGEKSANLSSRRGRSYSILSQASIDQVSQSESTHNGGVANDSPCLHNVYDVYEVPQTSEKHEKWNLDAENRLRKPDSEYQGMVEKPVKLGAAEKRKSMFKVYSEIKTPFPTLMMTGNDHKKEGMNEVYNSQAEFRKLNQRIERLEKERITAKQEITREGNDEEQLRLLKDIQSQLQSIQSEMRDLKSKKAAPKDNLSLASLQEVVRNSCYFPLTFERNKKYYIAGLNLSCLSLILCGVHFTFSISLNVMIMG 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00909 492 Coils Coil 75 95 - -
Vimu10g00909 492 PANTHER BNAANNG28530D PROTEIN 14 428 - -
Vimu10g00909 492 Pfam Zein-binding 20 110 IPR007656 -
Vimu10g00909 492 Coils Coil 22 52 - -
Vimu10g00909 492 ProSiteProfiles GTD-binding domain profile. 16 114 IPR007656 -
Vimu10g00909 492 Coils Coil 408 428 - -
Vimu10g00909 492 Coils Coil 367 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00909 Vimu-Chr10 8112757 8114235 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00909 - - vra:106757166 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00909 10 8112757 8114235 Vimu10g00909 10 8112757 8114235 ECH