Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2020 GGCATCTCCACGGATAGGATCCTAGATGTGAGAAAGCTTTTAGCGGTACACATTGAGACTTGTTCCTTGACCAATTTTTCCTTGTCTCATGAGGTGCGAGGCGCGAGGCTGAAAGACACTGTCGAGATCGTTTCCTTGAAACCCTGCCATCTGACCATCGTCCAAGAGGACTACACGGAAGAGCTTGCCGTCGCACACATTAGGCGACTCCTTGATATCGTGGCATGCACCACCTCCTTTGCCTCCGCCACAAAACCTCCCGCCTGCAAGTCTAAAGACCCCACGGAACCGGGTTCAGAAAATGGATCGGAAACAAGCCCGAGACTCAAACCCGTGGATCCGAATTCGGACACGGGCAATGCCAAAACCGACAAAATGGACGGTGACATCTCCATGTGTCCACCTCCCAGACTCGGACAGTTCTACGATTTCTTTTCGTTTCCGCACCTTACGCCGCCGTTTCAGTACATACGGAAATCAAATCGACCTTTCCTTGAGGATAAAACAGATGATTTCTTTCAGATTGATGTTAGAGTTTGTAGTGGAAAACCCACTACAATTGTTGCTTCTAGAATAGGATTCTATCCTGCTGGAAAACATCCACTTGTGAGTCATACATTGGTGGGTCTGCTTCAGCAGATAAGCAGGGTTTTTGATGCTGCTTACAAGGCACTTATGAAGGCGTTCACCGAACACAATAAGTTTGGCAATCTTCCTTATGGTTTTCGTGAAAACACATGGGTTGTTCCTCCAGTTGTTTCTGATAATCCATCCGTCTTTACACCACTTCCCACGGAAGATGAAACTTGGGGAGGAAATGGGGGTGGACAGGGCAGAGATGGTAATCACAAAAATAGACAGTGGGCCAGAGACTTTGCAATTCTAGCTGCAATGCCATGTCAAACTGCAGAGGAGAGACAGATTCGAGATAGGAAAGCTTTTCTACTTCATAGTTTATTCGTTGATGTATCAGTCTTCAAAGCTGTTTCTGCAATAAAGCATTTAGTGGATACTAAGCAAAACTCTTCTTTGCCAACTTCCTATGAAGAAAGAAATGGAGATTTAACTATCAAAGTGACAAGAGATGTATCCGATGCAAGTTTGAAGTTGGACTGCAAAAATGATGGAAATCGAGTTCTTGGATTGTCTGAAGAAGAACTAGCTCAGAGAAACCTTCTCAAAGGCATAACTGCTGATGAAAGTGCAACTGTTCATGATACTCCTACTTTAGGTGCAGTACTTATAAAACACTGTGGCTACACAGCAGTGGTAAAGGTCTCAGCTGACAGAGATTTGGAGGGGAGTCTCAATTCCTTGGAAATTGATATTGAGGAGCAGCCTGAAGGAGGTGCAAACGCATTGAATGTTAACAGCTTAAGGATGCTATTGCATAGGCCATCTACACTCCAATCATCAAATGCAATTCAACGAATCCAGGGCACAGACATTGAATATTCACGTTCAACTCAGTCATTGGTTAGGAAAGTCCTAGAGGAAAGTTTACTAAAATTGAAGGAAGAGACCACTAGACACAATAAATCTATCAGATGGGAGCTTGGGGCATGTTGGGTACAACATTTACAAAATCAGGCTACTGTGAAAACTGAGCCAAAAAAGGCCGAAGAGGCTAAAGTTGAACCAGCTGTTAAAGGTCTTGGGAGGCAAGGTGGATTACTAAAGGAATTAAAGAAAAAGATTGATAACAAAAACTCCAAAGTTGAAGTAGGAAAGGATATTTCCCCATCTAATAATGGCAATGAGATAAACAAGCAAGAAGCCACTAAACAAGAATTAGAGAGACAAGATGAAGAAAAAGAAACTATATGGAGAAAGCTACTTTCTGATGGTGCATTTACACGCCTTAAAGAATCTAAAACTGATCTTCATCTGAAGTCACCTGATGAATTGATGGACATGGCACATAAATATTATGTTGATACTGCACTTCCAAAGCTGGTGGCAGATTTTGCGTCCCTCGAACTCTCACCTGTGGATGGAAGGACGTTGACTGATTTCATGCATACCAGGGGCTTGCAAATGTCTTCCTTGGGCCAAGTGGTTGAGCTTGCAGATAAACTTCCTCATGTTCAATCTCTATGTATACACGAGATGGTTGTTCGAGCCTACAAGCATATCTTACAAGCAGTTGTTGCTGCAGTTGATAATGTTTCTGAGTTGGCTTCATCTATAGCATCATGCCTAAATATTTTGTTGGGAACACCAACATCTGAAACTAGTGAGGAAGATATTATTACTAGTTATGAACTGAAATGGAAATGGGTAGAAAACTTCCTTCTGAAGAGGTTTGGATGGCAATGGAAGGATGAAAACGGTCAAGATTTAAGAAAGTTTGCCATTCTTCGGGGACTCTGCCATAAGCATGTAGCTTGTTCATCTGCTGATGGCCGCACACTTCTGGAATCATCCAAGACTTCCTTGGATAAAGGTAAATTGGAGGATGCTGTCAATTATGGCACAAAGGCACTCTCAAAATTAGTGTCGGTATGTGGGCCTTACCATAGAATGACAGCAGGAGCATATAGCCTCTTGGCTGTTGTGCTGTACCATACTGGAGATTTCAATCAGGCAACTATCTATCAGCAAAAGGCACTAGATATTAACGAAAGAGAGCTTGGACTAGACCATCCTGATACGATGAAAAGTTATGGGGATCTTGCTGTTTTCTATTATCGACTCCAACATACAGAGTTGGCTTTAAAGTATGTTAATCGTGCTTTGTATCTTCTGCACTTAACTTGCGGACCTTCACATCCAAACACTGCTGCCACCTACATTAACGTAGCAATGATGGAAGAAGGATTGGGGAATGTCCATGTTGCTCTCAGATACCTTCATGAGGCTTTAAAATGTAACAAAAGATTACTTGGAGCTGATCATATTCAGACGGCTGCAAGCTATCATGCAATAGCTATTGCTCTTTCTTTGATGGAAGCCTACTCTCTAAGTGTTCAGCATGAACAGACCACCCTCCAGATCCTGCAGGCTAAACTTGGTTCTGATGATCTAAGGACACAGGATGCAGCTGCATGGCTGGAATACTTCGAGTCAAAGGCTCTGGAGCAACAGGAGGCTGCGCGGAATGGTACACCTAAGCCAGATGCCTCAATCTCCAGCAAAGGTCATTTAAGTGTGTCAGACCTCTTGGACTACATAACACCAGATGCTGATCAGAAAGCACGGGAAGCACAGAAAAAGGCTCGTGCCAAGTTAAAGGGAAAACCAGGCCAAAACTGGGAAACAGCTTCAGATGAAAATCAAAAGGATGAAGACATGTCTAAAGGTTATTCAATTACAGAGACTACCAGTGATAAAGAAAATAAATCTGAAGCTCAAATTAAAGACAATGGGATTGATAAAGTGGAGTCCACTCACATAGACCTAACGATTCTCAATGAAAGTAATAATAACCTAGCACAGGATGACAGCTCAGATGAAGGATGGCAGGAAGCTGTTTCCAAAAGTCGGTCACTCACTGGGCGCAAGTCATCTTCATCTAGAAGGCCCACCCTAGCAAAACTAAACACTAACTTCATGAATGTTTCTCAATCAAGATATCGGAGCAAGCCTACTAATTTTTCTTCTCCAAGAACAAATTTAAATGAGACCATTGTCGGACCATCCCCTTCTGTTCCAAAAAAGTTTGTTAAGAGTGCAAGCTTCAGTCCAAAGCTGAATAGCGGTAATGCCCCCGATGGTGGAGCAGAGAAGTTAACAGACTCTAGGTCAGCTCCAGCCACCCCTGCTCCAGGTGATCAAATTGCTAAACCAGCTCCTTCTAGCACTGGTGTCGGTGTTCAATCAGCAGGTAAACTTTATTCCTACAAAGAAGTAGCCTTAGCCCCACCTGGGACAATTGTGAAGGCAGTGGCTGAACAGTCACCAAAAGGAAATCCTATCCTACAAAATTCTGAGATTAGTGCCATGATAGTTACAATGAAGGAGACTCAAAATATTGTGGCAACGAATGATGTGGAAGATTTTGCTCAGAAATCAATTGATGAGAAAATACAAATCCCTGTCCATGAAGAACAAAAAGAAAGGGAAACTACTGTGGTGAACGGTAATAGAGAAACAGTAAATAGTAATGCCGACGACGAGATTGTTTCCGTTATAGAGAAGAAAAGTGAAGTTGGAAACATCACAGTTGTCGAGATTGAGAATTCTGGTTGCTTAGATAATATAAACAACAGTGCCTCTACAGGTGAATCAGAGGTACTGGTGCAAGAAAGTTCTGAAGCAACTTCCCACAATTCAAATCCCCTGACCATTTTAGTTGAAGACGAGAAACAGTTACTTTACAATGATTCCTGTGCGTCGATTGGTACGGGTAACGAGGGAGATGAGAAACATGAATCATCTAGCCCCAATGCAGTCTGTAAGTCACTACCATTAGAAGGAGAAAAACAAGAAACAGAAACAGAAACAGGAAAGGAACCAACCAGGAAACTTTCTGCAGCTGCTCCACCCTTTAATCCATCCACAATTCCAGTTTTTGGCTCTGTTCCTGTTCCAGGTTTCAAAGATCATGGAGGTATTTTGCCCCCACCAGTAAATATTGCTCCTTTGCTTCCAGTCAGTCCCCGAAGATCACCGCATCAGTCAGCTACGGCAAGGGTTCCATATGGTCCACGAATATCTGGTGGCTATAACAGATATGGGAACCGTGTTCCGCGCAATAAAACTGTATTCCTTTCAGGTGAACCCTCCCCTGATGGTAACCCCAACAGTCCTCCTAGAATAATGAATCCACATGCCACAGAGTTTGTACCTGGCCAACATTGGGTATCTAATGGTTATGTTGTTCCTCCTAACGGATATATGACTTCTCCAAATGTCATTCCAGGGTCTCCTAATTCTTTTCCCCCAGTGTCTCACAATGGTATACCACTGTCACCTAGTGGATATCCTGCTTCTCTAAATGGTACCCAAGTCGATCAAAATGGGTCTGTACCATCTCCAACCATTTCAACTGATTCATCACAAGTTGTGTCTGATGAAGCTGATCTTGAAAACAAAAGTCAAACTCCGGATGAGGAAAGTCAAAATTCTTTTCCTACAGATGTAAGTTCTGAAAAGGAGCATGGTGAGCAAAATCCTCAAGAAGAACTATCTGCCAGCAGTGAAAACTCTACTACTAATGTAGAAGAAAAGCAGGCAGATATCAACCCCCCATCTGATTTTAGTAACGAAGATAAAGTAATCAAGAAGGATGAAGTGGATCAGAAAAAGCAAAGCAAGTGTTGGGGTGATTACAGTGACAGTGAAGCTGATATGATTGAGGTCACAAGCTAA 5313 0.4273 GISTDRILDVRKLLAVHIETCSLTNFSLSHEVRGARLKDTVEIVSLKPCHLTIVQEDYTEELAVAHIRRLLDIVACTTSFASATKPPACKSKDPTEPGSENGSETSPRLKPVDPNSDTGNAKTDKMDGDISMCPPPRLGQFYDFFSFPHLTPPFQYIRKSNRPFLEDKTDDFFQIDVRVCSGKPTTIVASRIGFYPAGKHPLVSHTLVGLLQQISRVFDAAYKALMKAFTEHNKFGNLPYGFRENTWVVPPVVSDNPSVFTPLPTEDETWGGNGGGQGRDGNHKNRQWARDFAILAAMPCQTAEERQIRDRKAFLLHSLFVDVSVFKAVSAIKHLVDTKQNSSLPTSYEERNGDLTIKVTRDVSDASLKLDCKNDGNRVLGLSEEELAQRNLLKGITADESATVHDTPTLGAVLIKHCGYTAVVKVSADRDLEGSLNSLEIDIEEQPEGGANALNVNSLRMLLHRPSTLQSSNAIQRIQGTDIEYSRSTQSLVRKVLEESLLKLKEETTRHNKSIRWELGACWVQHLQNQATVKTEPKKAEEAKVEPAVKGLGRQGGLLKELKKKIDNKNSKVEVGKDISPSNNGNEINKQEATKQELERQDEEKETIWRKLLSDGAFTRLKESKTDLHLKSPDELMDMAHKYYVDTALPKLVADFASLELSPVDGRTLTDFMHTRGLQMSSLGQVVELADKLPHVQSLCIHEMVVRAYKHILQAVVAAVDNVSELASSIASCLNILLGTPTSETSEEDIITSYELKWKWVENFLLKRFGWQWKDENGQDLRKFAILRGLCHKHVACSSADGRTLLESSKTSLDKGKLEDAVNYGTKALSKLVSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNKRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSDDLRTQDAAAWLEYFESKALEQQEAARNGTPKPDASISSKGHLSVSDLLDYITPDADQKAREAQKKARAKLKGKPGQNWETASDENQKDEDMSKGYSITETTSDKENKSEAQIKDNGIDKVESTHIDLTILNESNNNLAQDDSSDEGWQEAVSKSRSLTGRKSSSSRRPTLAKLNTNFMNVSQSRYRSKPTNFSSPRTNLNETIVGPSPSVPKKFVKSASFSPKLNSGNAPDGGAEKLTDSRSAPATPAPGDQIAKPAPSSTGVGVQSAGKLYSYKEVALAPPGTIVKAVAEQSPKGNPILQNSEISAMIVTMKETQNIVATNDVEDFAQKSIDEKIQIPVHEEQKERETTVVNGNRETVNSNADDEIVSVIEKKSEVGNITVVEIENSGCLDNINNSASTGESEVLVQESSEATSHNSNPLTILVEDEKQLLYNDSCASIGTGNEGDEKHESSSPNAVCKSLPLEGEKQETETETGKEPTRKLSAAAPPFNPSTIPVFGSVPVPGFKDHGGILPPPVNIAPLLPVSPRRSPHQSATARVPYGPRISGGYNRYGNRVPRNKTVFLSGEPSPDGNPNSPPRIMNPHATEFVPGQHWVSNGYVVPPNGYMTSPNVIPGSPNSFPPVSHNGIPLSPSGYPASLNGTQVDQNGSVPSPTISTDSSQVVSDEADLENKSQTPDEESQNSFPTDVSSEKEHGEQNPQEELSASSENSTTNVEEKQADINPPSDFSNEDKVIKKDEVDQKKQSKCWGDYSDSEADMIEVTS* 1771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2020 1770 ProSiteProfiles TPR repeat profile. 844 877 IPR019734 GO:0005515
Pvu9g2020 1770 SUPERFAMILY TPR-like 881 999 IPR011990 GO:0005515
Pvu9g2020 1770 SMART tpr_5 886 919 IPR019734 GO:0005515
Pvu9g2020 1770 SMART tpr_5 928 961 IPR019734 GO:0005515
Pvu9g2020 1770 SMART tpr_5 844 877 IPR019734 GO:0005515
Pvu9g2020 1770 MobiDBLite consensus disorder prediction 1063 1100 - -
Pvu9g2020 1770 MobiDBLite consensus disorder prediction 1449 1496 - -
Pvu9g2020 1770 Pfam Mitochondrial function, CLU-N-term 4 74 IPR028275 -
Pvu9g2020 1770 CDD CLU-central 663 793 IPR033646 -
Pvu9g2020 1770 PANTHER BNAA08G13880D PROTEIN 1 793 - -
Pvu9g2020 1770 PANTHER BNAA08G13880D PROTEIN 792 1721 - -
Pvu9g2020 1770 MobiDBLite consensus disorder prediction 1472 1486 - -
Pvu9g2020 1770 ProSiteProfiles Clueless (Clu) domain profile. 266 538 IPR025697 -
Pvu9g2020 1770 MobiDBLite consensus disorder prediction 1105 1124 - -
Pvu9g2020 1770 Gene3D Tetratricopeptide repeat domain 796 1048 IPR011990 GO:0005515
Pvu9g2020 1770 MobiDBLite consensus disorder prediction 1624 1676 - -
Pvu9g2020 1770 MobiDBLite consensus disorder prediction 84 129 - -
Pvu9g2020 1770 SUPERFAMILY TPR-like 810 915 IPR011990 GO:0005515
Pvu9g2020 1770 MobiDBLite consensus disorder prediction 1624 1770 - -
Pvu9g2020 1770 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 1 793 IPR027523 GO:0006996
Pvu9g2020 1770 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 792 1721 IPR027523 GO:0006996
Pvu9g2020 1770 Pfam Translation initiation factor eIF3 subunit 135 661 793 IPR033646 -
Pvu9g2020 1770 MobiDBLite consensus disorder prediction 575 591 - -
Pvu9g2020 1770 MobiDBLite consensus disorder prediction 1142 1212 - -
Pvu9g2020 1770 MobiDBLite consensus disorder prediction 1142 1272 - -
Pvu9g2020 1770 MobiDBLite consensus disorder prediction 574 601 - -
Pvu9g2020 1770 MobiDBLite consensus disorder prediction 1408 1428 - -
Pvu9g2020 1770 Pfam Tetratricopeptide repeat 843 913 - -
Pvu9g2020 1770 Pfam Tetratricopeptide repeat 927 1001 - -
Pvu9g2020 1770 MobiDBLite consensus disorder prediction 1534 1563 - -
Pvu9g2020 1770 Coils Coil 586 608 - -
Pvu9g2020 1770 MobiDBLite consensus disorder prediction 1736 1757 - -
Pvu9g2020 1770 MobiDBLite consensus disorder prediction 96 121 - -
Pvu9g2020 1770 MobiDBLite consensus disorder prediction 1707 1732 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2020 Pvu-Chr9 28956505 28975235 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2020 K03255 - gmx:100806823 2992.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g2020 9 28956505 28975235 Pvu9g2020 9 28956505 28975235 ECH