Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1885 ATGGCTCCCAAAACTGGGAAAACCAAACCGCACAAGGCCAAGGGAGAGAAGAAGAAAAAAGAAGAGAAAGTTTTGCCAATCGTGATCGAAATTACAGTAGAAACACCAGACGAATCACAAGTTACGCTCAAGGGCATCTCCACGGACAAGATCCTAGACGTGAGAAAGCTTTTAGCGGTACACATTGAGACTTGTTACTTGACCAACTTTTCCTTATCCCACGAGGTGCGAGGCGCGAGGCTGAAAGACACGGTGGAAATCGTGTCCTTGAAACCTTGCCATCTGACCATCGTCCAAGAGGACTACACGGAAGAGCTCGCCGTCGCACACATTCGGCGACTCCTCGACATCGTGGCCTGCACCACCTCCTTCGCCTCCGCCTCCGCCGCCGCAGCAGCAAAACCCCCCGCCGGAAAGTCCAAAGACCCCAACGAACCCGGTTCAGAAAATGGACCCGAAACAAACCCGAAACCCAAACCCGTGGATCCGAATTCGGACCTGGTCAATGCCAAAAGCGACAAAGCTGACGCTGACATCTCTATGTGTCCACCTCCCAGGCTTGGACAGTTCTACGATTTCTTTTCCTTTTGGCATCTTACACCGCCGTTTCAATACATACGGAGATCGAATCGTCCTTTCCTTGAGGATAAAACAGAAGATGATTTCTTTCAAATTGATGTTAGGGTTTGTAGTGGAAAACCTACTACAATTGTTGCTTCTAGAATAGGATTCTATCCTGCTGGAAAACGTCCACTTGTGAGCCATACTTTGGTGGGTCTCCTTCAGCAGATAAGCAGGGTGTTTGATGCAGCCTACAAGGCACTAATGAAGGCGTTCACAGAACACAATAAATTTGGCAATCTTCCTTACGGTTTTCGTGCAAACACATGGGTTGTCCCTCCAGTTGTTTCTGACAATCCATCAGTCTTTCTGCCACTTCCCATGGAAGATGAAACATGGGGAGGAAATGGGGGCGGACAAGGTAGAGATGGTAAGCATGAAAATAGACAGTGGGCCAGAGATTTTGCAATTCTAGCTGCAATGCCTTGTCAAACAGCAGAGGAGAGACAAATTCGAGATAGGAAAGCTTTTCTACTTCATAGTTTATTTGTCGATGTATCAGTCTTCAAAGCAGTTTCTGCAATAAAGCATTTAGTAGATATTAAGCAAAACTCTTTCAGTAATTCAGCTTTGCCAACTTCATATGAAGAAAGAATTGGAGATTTAACTATTAAAGTGACGAGAGATGTATCTGACGCAAGTTTGAAGTTGGACTGCAAAAATGATGGAAATCGAGTTCTTGGATTGTCTGATGACGAACTAGCTCAGAGAAACTTGCTGAAAGGCATAACTGCTGACGAGAGTGCAACTGTTCATGATACTCCTACTTTAGGTGCAGTACTTATAAGCCATTGTGGCTACACAGCTGTGGTAAAGGTCTCAGGTGAGAGAGATATGGAGGGGAGTCATAATTCCTTGGAAATTGATATTGAGGAGCAGCCTGAAGGAGGTGCAAACGCATTGAATGTTAACAGCTTAAGGATGCTATTGCATAGGTCATCTACACCTCAATCATCTAATGCAATTCAACGAATCCAAAGCTCAGATATTGAATATTCACATTTTACTCGGTCATTGGTAAGGAAAGTCCTAGAGGAAAGTCTACTGAAATTGAAGGAAGAAACCACTAGACACAGTAAGTCTATCAGATGGGAGCTTGGGGCATGTTGGGTACAACATTTACAAAATCAAGCTACTGGGAAAACTGAGCCAAAAAAGGAAGAAGAGGCTAAAGTTGAACCAGCTGTTAAAGGCCTTGGGAAGCAAGGTGGATTACTAAAGGAATTAAAGAAAAAGATTGATATCAGAAACTCGAAAGTTGAAGTAGGAAAAGATATTTCGCCATGTAATGGCAATGACATAAACAAGCCAGAAGCCACAAAACAGGAATTAGAGAGACAAGATGAAGAAAAGGAAACTATATGGAAAAAACTGCTATCTGATGCTGCATATACACGCCTTAAGGAATCTAAAACTGATCTTCATCTGAAGTCACCTGATGAATTGATGGAAATGGCACATAAATATTATGTTGATACTGCACTTCCCAAGCTGGTGGCAGATTTTGGGTCCCTTGAACTCTCACCTGTTGATGGAAGGACGTTGACTGATTTCATGCATACTAGGGGCTTGCAAATGTCTTCCTTAGGACGAGTGGTTGAGCTTGCAGATAAACTTCCCCATGTGCAATCTCTATGTATACATGAGATGGTTGTTCGAGCCTACAAGCATATCTTGCAAGCAGTTGTTGCAGCAGTTGATAATGTTTCTGAGTTGGCTTCATCTATAGCATCATGCTTAAATATATTATTGGGAACACCATCACCTGAAACTAATGATGAAGATATTACTAGTTGCGAAGAACTGAAATGGAGATGGGTAGAAAACTTCCTTCTAAAGAGGTTTGGGTGGCAGTGGAAGGATGAAAATGGTAAAGATTTGAGAAAGTTTGCCATTCTTCGTGGACTCTGTCATAAGGTGGGGCTTGAGCTGGTTCCTAGGGACTATGATATGGATACAGCAACTCCTTTTAAAAAGACAGATATTGTAAGCATGGTCCCCATATATAAGCATGTAGCTTGTTCATCTGCTGATGGCCGCACACTTTTGGAATCATCTAAGACTTCCTTGGATAAAGGTAAATTGGAGGATGCTGTCAACTATGGCACAAAGGCACTCTCAAAATTAGTGTCCGTATGTGGGCCTTACCATAGAATGACAGCAGGAGCATATAGTCTCTTGGCTGTAGTGTTGTACCATACTGGAGATTTCAACCAGGCAACTATCTATCAGCAAAAGGCACTAGATATTAATGAAAGAGAGCTTGGACTGGACCATCCTGATACGATGAAAAGTTATGGAGATCTTGCTGTTTTCTATTATCGACTCCAACATACAGAGTTGGCTTTAAAGTATGTTAATCGTGCTTTGTATCTTCTGCACTTAACCTGTGGACCATCACATCCAAACACGGCTGCCACCTACATTAATGTTGCAATGATGGAAGAAGGATTGGGGAATGTCCATGTTGCTCTCAGATACCTTCATGAGGCTTTAAAATGTAACAAAAGATTACTTGGAGCTGATCATATACAGACGGCTGCAAGCTATCATGCAATAGCTATTGCTCTTTCTTTGATGGAAGCATACTCTCTAAGTGTTCAGCATGAACAGACCACCCTCCAGATCCTGCAGGCTAAACTTGGTTCTGATGATCTAAGGACACAGGATGCTGCTGCATGGCTAGAATACTTTGAGTCAAAGGCTCTGGAGCAACAGGAGGCTGCACGGAATGGTACACCTAAACCAGATGCCTCAATCTCCAGCAAAGGTCATTTAAGTGTGTCAGACCTCTTGGATTACATAACTCCAGATGCTGATCAGAAAGCACGGGAAGCACAGAAAAAGGCCCGTGCCAAGTTAAAGGGAAAACCAGGCCAAAACTGGGAAACAGCTTCAGATGAAAATCAGAAGGATGAAGACATGTCTCGTGGTTATTCAATTACAGAGATTACTAACGATAAAGAAAATAAATCTGAAGCTCAAATTAAAGATCACGGGATTGATAAAGTTGAGTCCGCTCACTTAGACCAAACAATGCTCAATGAAAGTGATAATCTGGCACAGGATGACAGCTCAGATGAAGGATGGCAGGAGGCTGTTCCCAAAGGTCGTTCACTCACTGGGCGCAAGTCATCTTCATCAAGGAGGCCCACCCTAGCAAAACTGAATACTAACTTCATGAATGTTTCCCAATCAGCAAGATATCGAGGCAAGCCTACTAATTTTTCCTCTCCAAGAACAAATTTAAATGAGACTATTGCTGGGCCATCCCCATCTGTTGCAAAAAAGTTTATTAAGAGTGCAAGCTTCAGTCCAAAGCTGAATAGCAGTAATGCCCCAGATGCTGGAGCAGAGAAGTTAGCGGACTCAAAGTCAGCTCCAGCCAGCCCAGCTCCAAGTGATCAAATTGCTAAACCAGCTCCTTCTAACAGTGGCATCAGTGTTCAGTCAGCAGGTAAACTTTATTCCTACAAAGAAGTAGCCTTAGCCCCACCTGGGACAATTGTGAAGGTAGTGGCTGAACAGTCGCCGAAAGGAAATCCTATTCAACTAAATTCTGAGGTGAGTGCCATGATAGTTGCAACAAAGGAGACTCAAAATATCATGGCAACAACAAATGATGTGGAAGATTATTTTCAGAAATCAATTGATGTGAAACAGCAAAGCCCTGTCCATCAAGAACAAGAAGAAAAGGAAACCACTGTGGTGAAAGATAATACAGAAACAGTAAATAGTAAGGCCAAAGATGAGGTTTTTGAAGTTAAACTCCAGGAAGCTAACAATGTTGCCATACTAGAGAAGATAACTGAAGTTGCAAACATCACAGTCGTGGAGGTTGAGGATTCTGGTTGCTTAGACAATAGAAACAACAGTGCCTCTAAAGGTGCCTCAGAGATACAAGTGCAAGAAAGTTGTCAAGCAACTTCCCACGATTTGAATCCCCTAACCATTTTAGTTGAAGGCAAAAAACAGTTGTTAATTGACAATGATGTCTCTGTGTCGAAAGATATGGTTACGGAGGGAGATGAGAAACATGAATCATCCAGTGACAATGCAGTAAGTAATCCTCTACCATCAGAAGGAGAAAAGCAAGAAACAGAAACAGGAAAGGAACCAACCAAGAGACTTTCTGCAGCTGCACCACCGTTTAATCCATCCACAATTCCAGTTTTTGGCTCTGTTCCTGTTCCAGGTTTCAAAGATCATGGTGGTATTTTGCCCCCACCACTAAATATTTCTCCTTTGCTTCCTGTCAGTCCCCCCCGAAGATCTCCACATCAGTCAGCTACTGCCAGGGTTCCATATGGTCCACGAATATCTGGTGGCTATAACAGATATGGGAACCGTGTTCCACGGAATAAAACTGTATTTCTCTCTGGTGAACCTTCCCCTGATGGTAACCCCAACAGCCCTCCTAGAATAATGAACCCACATGCCACAGAGTTTGTACCTGGCCAACATTGGGTACCTAATGGCTATGTTGTGCCTCCTAACGGATATATGGCTTCTCCGAATGGAATTCCAGCCTCACCTAATAGTTTTCCCCCAGTGTCTTACAGTGTTATGCCTGTGTCACCCAGTGGATATCCTGCTTCACTAAATGGTGTCCAAGTGAATCAAAATGGGTTAGCAACATCTCCAACCAGTTCAACTGATTCGGCACAAGTTGTATATGTTGAAACTGACCTTGAAACCAAAAGTAAAACTCTTGATGAGGAAAATAAAGATTCATTTTCAACAGATGTAAGTTCTGAAAAGAAGCATGTTGTGCAAAATGCTAATGAATTATCTGCCAGCAGTGAAAATCCGGAAGTAGAAGAAAAGCAGGAAGATCTCAGCCCCCCATCTGGTTGTAGTAAAGAGGATAAAGTAACCAACAAGGATGCAGTAGATGAGAAAAAGCCAAGCAAGTGTTGGGGAGATTACAGTGACAATGAAGCTGAAGTCACAAGTTAA 5580 0.4292 MAPKTGKTKPHKAKGEKKKKEEKVLPIVIEITVETPDESQVTLKGISTDKILDVRKLLAVHIETCYLTNFSLSHEVRGARLKDTVEIVSLKPCHLTIVQEDYTEELAVAHIRRLLDIVACTTSFASASAAAAAKPPAGKSKDPNEPGSENGPETNPKPKPVDPNSDLVNAKSDKADADISMCPPPRLGQFYDFFSFWHLTPPFQYIRRSNRPFLEDKTEDDFFQIDVRVCSGKPTTIVASRIGFYPAGKRPLVSHTLVGLLQQISRVFDAAYKALMKAFTEHNKFGNLPYGFRANTWVVPPVVSDNPSVFLPLPMEDETWGGNGGGQGRDGKHENRQWARDFAILAAMPCQTAEERQIRDRKAFLLHSLFVDVSVFKAVSAIKHLVDIKQNSFSNSALPTSYEERIGDLTIKVTRDVSDASLKLDCKNDGNRVLGLSDDELAQRNLLKGITADESATVHDTPTLGAVLISHCGYTAVVKVSGERDMEGSHNSLEIDIEEQPEGGANALNVNSLRMLLHRSSTPQSSNAIQRIQSSDIEYSHFTRSLVRKVLEESLLKLKEETTRHSKSIRWELGACWVQHLQNQATGKTEPKKEEEAKVEPAVKGLGKQGGLLKELKKKIDIRNSKVEVGKDISPCNGNDINKPEATKQELERQDEEKETIWKKLLSDAAYTRLKESKTDLHLKSPDELMEMAHKYYVDTALPKLVADFGSLELSPVDGRTLTDFMHTRGLQMSSLGRVVELADKLPHVQSLCIHEMVVRAYKHILQAVVAAVDNVSELASSIASCLNILLGTPSPETNDEDITSCEELKWRWVENFLLKRFGWQWKDENGKDLRKFAILRGLCHKVGLELVPRDYDMDTATPFKKTDIVSMVPIYKHVACSSADGRTLLESSKTSLDKGKLEDAVNYGTKALSKLVSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNKRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSDDLRTQDAAAWLEYFESKALEQQEAARNGTPKPDASISSKGHLSVSDLLDYITPDADQKAREAQKKARAKLKGKPGQNWETASDENQKDEDMSRGYSITEITNDKENKSEAQIKDHGIDKVESAHLDQTMLNESDNLAQDDSSDEGWQEAVPKGRSLTGRKSSSSRRPTLAKLNTNFMNVSQSARYRGKPTNFSSPRTNLNETIAGPSPSVAKKFIKSASFSPKLNSSNAPDAGAEKLADSKSAPASPAPSDQIAKPAPSNSGISVQSAGKLYSYKEVALAPPGTIVKVVAEQSPKGNPIQLNSEVSAMIVATKETQNIMATTNDVEDYFQKSIDVKQQSPVHQEQEEKETTVVKDNTETVNSKAKDEVFEVKLQEANNVAILEKITEVANITVVEVEDSGCLDNRNNSASKGASEIQVQESCQATSHDLNPLTILVEGKKQLLIDNDVSVSKDMVTEGDEKHESSSDNAVSNPLPSEGEKQETETGKEPTKRLSAAAPPFNPSTIPVFGSVPVPGFKDHGGILPPPLNISPLLPVSPPRRSPHQSATARVPYGPRISGGYNRYGNRVPRNKTVFLSGEPSPDGNPNSPPRIMNPHATEFVPGQHWVPNGYVVPPNGYMASPNGIPASPNSFPPVSYSVMPVSPSGYPASLNGVQVNQNGLATSPTSSTDSAQVVYVETDLETKSKTLDEENKDSFSTDVSSEKKHVVQNANELSASSENPEVEEKQEDLSPPSGCSKEDKVTNKDAVDEKKPSKCWGDYSDNEAEVTS* 1860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1885 1859 MobiDBLite consensus disorder prediction 1313 1355 - -
Gso6g1885 1859 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 1 1723 IPR027523 GO:0006996
Gso6g1885 1859 Pfam Tetratricopeptide repeat 1011 1085 - -
Gso6g1885 1859 Pfam Tetratricopeptide repeat 927 997 - -
Gso6g1885 1859 Pfam Mitochondrial function, CLU-N-term 48 118 IPR028275 -
Gso6g1885 1859 MobiDBLite consensus disorder prediction 131 169 - -
Gso6g1885 1859 MobiDBLite consensus disorder prediction 1545 1592 - -
Gso6g1885 1859 MobiDBLite consensus disorder prediction 631 654 - -
Gso6g1885 1859 MobiDBLite consensus disorder prediction 1809 1849 - -
Gso6g1885 1859 SUPERFAMILY TPR-like 965 1083 IPR011990 GO:0005515
Gso6g1885 1859 MobiDBLite consensus disorder prediction 1776 1859 - -
Gso6g1885 1859 Pfam Translation initiation factor eIF3 subunit 135 714 857 IPR033646 -
Gso6g1885 1859 SMART tpr_5 928 961 IPR019734 GO:0005515
Gso6g1885 1859 SMART tpr_5 1012 1045 IPR019734 GO:0005515
Gso6g1885 1859 SMART tpr_5 970 1003 IPR019734 GO:0005515
Gso6g1885 1859 MobiDBLite consensus disorder prediction 1628 1658 - -
Gso6g1885 1859 MobiDBLite consensus disorder prediction 1226 1298 - -
Gso6g1885 1859 MobiDBLite consensus disorder prediction 1 20 - -
Gso6g1885 1859 MobiDBLite consensus disorder prediction 1247 1296 - -
Gso6g1885 1859 MobiDBLite consensus disorder prediction 1147 1184 - -
Gso6g1885 1859 MobiDBLite consensus disorder prediction 1776 1791 - -
Gso6g1885 1859 CDD CLU-central 716 858 IPR033646 -
Gso6g1885 1859 SUPERFAMILY TPR-like 894 999 IPR011990 GO:0005515
Gso6g1885 1859 ProSiteProfiles TPR repeat profile. 928 961 IPR019734 GO:0005515
Gso6g1885 1859 ProSiteProfiles Clueless (Clu) domain profile. 316 592 IPR025697 -
Gso6g1885 1859 PANTHER BNAA08G13880D PROTEIN 1 1723 - -
Gso6g1885 1859 Gene3D Tetratricopeptide repeat domain 882 1133 IPR011990 GO:0005515
Gso6g1885 1859 MobiDBLite consensus disorder prediction 1792 1808 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1885 Gso-Chr6 27649137 27667708 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1885 K03255 - gmx:100792534 3522.64