Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1149 ATGGCTCCCAAAACTGGCAAAACCAAACCGCACAAGGCCAAGGGAGACAAGAAGAAAAGAGAAGAGAAAGTTTTGCCCACCGTCATCGAAATTACAGTAGAAACACCAGACGAATCACAAGTTACTCTCAAGGGCATCTCCACGGATAGGATCCTAGACGTGAGAAAGCTTTTAGCGGTACACGTTGAGACTTGTTCCTTGACCAATTTTTCCTTATCTCATGAGGTGCGAGGCGCGAGGCTGAAAGACACGGTCGAAATCGTTTCCTTGAAACCCTGCCATCTGACCATCGTCCAAGAGGACTACACGGAAGAGCTTGCCGTCGCACACATTCGGCGACTCCTTGACATCGTGGCCTGCACCACCTCCTTTGCCTCCGCCACAAAACCTCCCGCCTGCAAGTCCAAAGACCCCACCGAACCGGGTTCAGAAAATGGATCGGAAACAAGCCCAAGAGTCAAACCCGTGGATCCGAATTCGGACTCGGGCAATGCCAAAACCGACAAAGTGGACGGTGACATCTCCATGTGTCCACCTCCCAGGCTTGGACAGTTCTACGATTTCTTTTCGTTTTCTCACCTTACGCCGCCGTTTCAATACATACGGAAATCAAATCGACCTTTCCTTGAGGAGAAGACAGAAGATGATTTCTTTCAGATTGATGTTAGAGTTTGTAGTGGAAAACCTACTACAATTGTTGCTTCTAGAATAGGATTCTATCCTGCTGGAAAACATCCACTTGTGAGTCATACATTGGTGGGTCTGCTTCAGCAGATAAGCAGGGTTTTTGATGCTGCTTACAAGGCACTTATGAAGGCGTTCACGGAACACAATAAATTTGGTAATCTTCCTTATGGTTTTCGTGAAAACACATGGGTTGTTCCTCCGGTTGTTTCTGATAATCCATCCGTCTTTCCACCACTTCCCGTGGAAGATGAAACTTGGGGAGGAAATGGGGGTGGACAAGGCAGAGGTTTTGATCACGAAAATAGACAGTGGGCGAGAGACTTTGCAATTCTAGCTGCAATGCCATGTCAAACTGCAGAGGAGAGACAGATTCGGGATAGGAAAGCTTTTCTACTTCATAGTTTATTTGTTGATGTATCAGTCTTCAAAGCTGTTTCGGCAATAAAAAATTTAGTGGATATTAAGCAAAACTCTTCTTTGCCAACTTCGTATGAAGAAAGTGTTGGAGATTTAACTATTAAAATAACAAGAGATGTATCCGACGCTAGTTTGAAGTTGGACTGCAAAAATGATGGAAATCGAGTTCTTGGATTGTCTGAAGAAGAACTAGCTCAGAGAAACCTTCTCAAAGGCATAACTGCTGATGAGAGTGCAACTGTTCATGATACTCCTACTCTAGGTGCAGTACTTATAAAACACTGTGGCTACACAGCTGTTGTAAAGGTCTCCGCTGACAGAGATTTGGAGGGGAGTCCTAATTCGTCAGAAATTGATGTTGAAGAGCAGCCTGAAGGAGGTGCAAACGCATTGAATGTTAACAGCTTAAGGATGATATTGCATAGGCCATCTACACTCCAATCATCAAATGCAATTCAACGAATCCATGGCACAGACATTGAATATTCACGTTCAACTCAATCATTGGTAAGGAAAGTCCTAGAAGAAAGTTTACAAAAATTGAAGGAAGAAACCACTAGACACAGAAAATCTATCAGATGGGAGCTTGGGGCATGTTGGGTACAGCATTTACAAAATCAAGCTACTGGGAAAACTGAGCCAAAAAAGGAAGAAGAGGCTAAGATTGAGCCAGCTGTTAAAGGTCTTGGGAGGCAAGGTGGATTACTAAAGGAATTAAAGAAAAAAATTGATAACAAAAACTCCAAAGTTGAAGTAGGAAAGGATATTTCCCCATCTAATAATGACAACGACATAAACAAGCAAGAAGCCACGAAACAGGAATTAGAGAGACAAGGGGAAGAAAAGGAAACTATATGGAGAAAGCTACTTTCTGAAGCTGCATTTACACGTCTTAAAGAATCTAAAACTGATCTTCATCTGAAGTCACCTGATGAATTGATGGAGATGGCACATAAATATTATGTTGATACTGCACTTCCAAAGCTGGTGGCAGATTTTGCGTCCCTTGAACTCTCACCTGTTGATGGAAGGACGTTGACTGATTTCATGCATACTAGGGGCTTGCAAATGTCTTCCTTAGGCCAAGTGGTTGAGCTTGCAGATAAACTCCCTCATGTGCAATCTCTATGTATACATGAGATGGTTGTTCGAGCCTACAAGCATATCTTACAAGCAGTTGTTGCTGCAGTTGATAATGTTTCTGAATTGGCTTCATCTATTGCATCATGCCTAAATATATTGTTGGGAACACCAACATCTGAAACTACTGATGAAGATATTATTACTAGTTATGAACTGAAATGGAAATGGGTAGAAAACTTTCTTCTGAAGAGGTTTGGATGGCAATGGAAGGATGAAAATGGTCAAGATTTAAGAAAGTTTGCCATTCTTCGGGGACTCTGCCATAAGGTGGGGCTTGAACTGGTTCCTAGGGACTATGATATAGATACATCATGTCCTTTTAGAAAGACGGATATTGTAAGCATGGTCCCCATATATAAGCATGTAGCTTGCTCATCTGCTGATGGCCGCACACTTTTGGAATCATCCAAGACTTCCTTGGATAAAGGTAAATTGGAGGATGCTGTCAATTATGGCACAAAGGCACTCTCAAAATTAGTGTCGGTATGTGGGCCTTACCATAGAATGACAGCAGGAGCATATAGTCTCTTGGCTGTTGTGCTGTACCATACTGGAGATTTCAATCAGGCAACTATTTATCAGCAAAAGGCACTAGATATTAACGAAAGAGAGCTTGGACTGGACCATCCTGATACGATGAAAAGTTATGGGGATCTTGCTGTTTTCTATTATCGACTCCAACATACGGAGTTGGCTTTAAAGTATGTTAATCGTGCTTTGTATCTTCTGCACTTAACTTGCGGGCCTTCACATCCAAACACGGCTGCCACCTACATTAACGTAGCAATGATGGAAGAAGGATTAGGGAATGTCCATGTTGCTCTCAGATACCTTCATGAGGCTTTAAAATGTAACAAAAGATTACTTGGAGCTGATCATATTCAGACGGCTGCCAGCTATCATGCAATAGCTATTGCTCTTTCTTTGATGGAAGCATACTCTCTAAGTGTTCAGCATGAACAGACCACCCTCCAGATCCTGCAGGCTAAACTTGGTTCTGACGATCTAAGGACACAGGATGCAGCAGCATGGCTGGAATACTTCGAGTCAAAGGCTCTCGAGCAACAGGAGGCTGCACGGAATGGTACACCTAAGCCAGATGCGTCAATCTCTAGCAAAGGTCATTTAAGTGTGTCAGACCTCTTGGACTACATAACACCGGACGCAGATCAGAAAGCGCGGGAAGCACAGAAAAAGGCTCGTGCCAAGTTAAAGGGAAAACCAGGCCAAAACTGGGAAACAGCTTCAGATGAAAATCAGAAGGATGAAGAGATGTCTAAAGATTATTCATTTACAGAGACTACTAGTGATAAAGAAAATAAATCTGAAGCTCAAATTAAAGACAACGGGATTGATAAAGTTGAGTCCACTCACATAGACCAAACGATGGTCAATGAAAGTAATAATAAGCTGGCACAGGATGACAGCTCGGATGAAGGGTGGCAGGAAGCTGTTCCCAAGAGTCGGTCACTCACTGGGCGGAAGTCATCTTCATCTAGAAGGCCCACCCTAGCAAAACTAAACACTAACTTCATGAATGTTTCTCAGTCAAGATATCGAGCCAAGCCTAATAACTTCTCTTCTCCAAGAACAAATTTAAATGAGACCATTGTGGGACCATCCCCTTCTGTTCCAAAGAAGTTTGTTAAGAGTGCAAGCTTCAGTCCAAAGCTGAATAGCGGTAGTGCCCCCGATGGTGGAGCAGTAACAGACTCTAAGTCGGCTCCAGACACCCCTGCTCCAAGTGATCAAATTGCTAAACCAGCTCCTTCTAGCACGGGTGTCAGTGTTCAATCAGCAGGTAAACTTTATTCCTACAAAGAAGTAGCCTTAGCCCCACCTGGAACAATTGTGAAGGCGGTGGCTGAACAGTCACCAAAAGGAAATCCTATCCAACAAAATTCTGAGATTAGTGCCATGATAGTTTCAATAAAGGACACTCAAAATATTGTGGCAACGAATGACGTGGAAGATTTTGGTCAGAAATCAATTATTGAGAAAATACAAATCCCTGTCCATGAAGAAAAAAAAGAAAGGGAAACCACGGTGGTGAACGGTAATACAGAAACAGTAAATAATAAGGCCGACGACGAGGTTGCACTTAAAATCCAGGAAGCTAGCGTTGTTTCCATAATAGAGAAGAAAAGTGAAGTTGGAAACATCACAGTTGTCGAGATTGCGAATTCTGGTTGCATAAAAAATATAAACAAGGGTGCCTCTAAAGGTGAATCCGAGGTACTACTGCAAGAAAGTTGTGAAGCAACATCCGACAATTCAAATCCCCTAACCATTTTAGTTGAAGACGAAAAACAGTTACTTGACAACGAGTCCTATTTGTTGATAGATACGGGTAACGAGGGAGATGAGAAACATGAATCTAGTAGCAATGCAGTCTGTAAGCCACTACCATTAGAAGGAGAAAAGCAAGAAACAGAAACAGGAAGGGAACCGACCAAGAAACTTTCTGCAGCTGCACCACCGTTTAATCCATCCACAATTCCAGTTTTTGGATCTGTTCCTGTTCCAGGCTTTAAGGACCACGGAGGTATTTTGCCCCCACCAGTAAATATTGCTCCTTTGCTTCCAGTCAGTCCCCGAAGATCACCGCATCAGTCAGCTACGGCTAGGGTTCCATATGGTCCACGAATATCTGGTGGCTATAACAGATATGGGAACCGTGTTCCGCGGAATAAAGCTGTATTCCTCTCAGGTGAACCCTCCCCCGATGGTAACCCCAATAGTCCTCCTAGAATAATGAATCCACATGCAACAGAGTTTGTACCAGGCCAACATTGGGTATCTAATGGCTATGTTGTTTCTCCCAACGGATATATGACTTCTCCAAATGCCATTCCAGGGTCTCCTAATAATTTTGCCCCAGTGTCTCCCAATGGCATGCCAGTGTCACCTAGTGGATTTCCTGCTACTCTAAATGGTATCCAAGTGAATCACAACGGGTCTGTACCTTCTCCAACCATTTCAACTGATTCATCACAAGTTGCGTGTGTTGAAACTGATATTGAAAAGAAAACTCAAACTCTGGATGAGGAAAGTAAAAGTTCTTTTCCAACAGATGTAAGTTCTGAAAAGAAAGATGTTGAGCAAAATCCTCAAGAACTATCTGCCAGCAGTGAAAACTCTACTCCTAAAGTAGAAGAAAAGCAGGCAGATCTCAGCCCCCCATCTGATTTTAGTAACGAAGATACAGTGATCAAGAAGGATGCAGTGGATCAGAAAAAGCAAAGCAAGTGCTGGGGAGATTACAGTGACAGTGAAGCTGATATGATTGAGGTCACAAGCTAA 5550 0.4295 MAPKTGKTKPHKAKGDKKKREEKVLPTVIEITVETPDESQVTLKGISTDRILDVRKLLAVHVETCSLTNFSLSHEVRGARLKDTVEIVSLKPCHLTIVQEDYTEELAVAHIRRLLDIVACTTSFASATKPPACKSKDPTEPGSENGSETSPRVKPVDPNSDSGNAKTDKVDGDISMCPPPRLGQFYDFFSFSHLTPPFQYIRKSNRPFLEEKTEDDFFQIDVRVCSGKPTTIVASRIGFYPAGKHPLVSHTLVGLLQQISRVFDAAYKALMKAFTEHNKFGNLPYGFRENTWVVPPVVSDNPSVFPPLPVEDETWGGNGGGQGRGFDHENRQWARDFAILAAMPCQTAEERQIRDRKAFLLHSLFVDVSVFKAVSAIKNLVDIKQNSSLPTSYEESVGDLTIKITRDVSDASLKLDCKNDGNRVLGLSEEELAQRNLLKGITADESATVHDTPTLGAVLIKHCGYTAVVKVSADRDLEGSPNSSEIDVEEQPEGGANALNVNSLRMILHRPSTLQSSNAIQRIHGTDIEYSRSTQSLVRKVLEESLQKLKEETTRHRKSIRWELGACWVQHLQNQATGKTEPKKEEEAKIEPAVKGLGRQGGLLKELKKKIDNKNSKVEVGKDISPSNNDNDINKQEATKQELERQGEEKETIWRKLLSEAAFTRLKESKTDLHLKSPDELMEMAHKYYVDTALPKLVADFASLELSPVDGRTLTDFMHTRGLQMSSLGQVVELADKLPHVQSLCIHEMVVRAYKHILQAVVAAVDNVSELASSIASCLNILLGTPTSETTDEDIITSYELKWKWVENFLLKRFGWQWKDENGQDLRKFAILRGLCHKVGLELVPRDYDIDTSCPFRKTDIVSMVPIYKHVACSSADGRTLLESSKTSLDKGKLEDAVNYGTKALSKLVSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNKRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSDDLRTQDAAAWLEYFESKALEQQEAARNGTPKPDASISSKGHLSVSDLLDYITPDADQKAREAQKKARAKLKGKPGQNWETASDENQKDEEMSKDYSFTETTSDKENKSEAQIKDNGIDKVESTHIDQTMVNESNNKLAQDDSSDEGWQEAVPKSRSLTGRKSSSSRRPTLAKLNTNFMNVSQSRYRAKPNNFSSPRTNLNETIVGPSPSVPKKFVKSASFSPKLNSGSAPDGGAVTDSKSAPDTPAPSDQIAKPAPSSTGVSVQSAGKLYSYKEVALAPPGTIVKAVAEQSPKGNPIQQNSEISAMIVSIKDTQNIVATNDVEDFGQKSIIEKIQIPVHEEKKERETTVVNGNTETVNNKADDEVALKIQEASVVSIIEKKSEVGNITVVEIANSGCIKNINKGASKGESEVLLQESCEATSDNSNPLTILVEDEKQLLDNESYLLIDTGNEGDEKHESSSNAVCKPLPLEGEKQETETGREPTKKLSAAAPPFNPSTIPVFGSVPVPGFKDHGGILPPPVNIAPLLPVSPRRSPHQSATARVPYGPRISGGYNRYGNRVPRNKAVFLSGEPSPDGNPNSPPRIMNPHATEFVPGQHWVSNGYVVSPNGYMTSPNAIPGSPNNFAPVSPNGMPVSPSGFPATLNGIQVNHNGSVPSPTISTDSSQVACVETDIEKKTQTLDEESKSSFPTDVSSEKKDVEQNPQELSASSENSTPKVEEKQADLSPPSDFSNEDTVIKKDAVDQKKQSKCWGDYSDSEADMIEVTS* 1850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1149 1849 CDD CLU-central 708 849 IPR033646 -
Vra3g1149 1849 SUPERFAMILY TPR-like 957 1075 IPR011990 GO:0005515
Vra3g1149 1849 PANTHER BNAA08G13880D PROTEIN 1 1778 - -
Vra3g1149 1849 MobiDBLite consensus disorder prediction 1139 1345 - -
Vra3g1149 1849 Pfam Mitochondrial function, CLU-N-term 48 118 IPR028275 -
Vra3g1149 1849 MobiDBLite consensus disorder prediction 620 634 - -
Vra3g1149 1849 MobiDBLite consensus disorder prediction 1730 1749 - -
Vra3g1149 1849 ProSiteProfiles TPR repeat profile. 920 953 IPR019734 GO:0005515
Vra3g1149 1849 Coils Coil 633 653 - -
Vra3g1149 1849 MobiDBLite consensus disorder prediction 1324 1345 - -
Vra3g1149 1849 ProSiteProfiles Clueless (Clu) domain profile. 311 583 IPR025697 -
Vra3g1149 1849 SMART tpr_5 920 953 IPR019734 GO:0005515
Vra3g1149 1849 SMART tpr_5 1004 1037 IPR019734 GO:0005515
Vra3g1149 1849 SMART tpr_5 962 995 IPR019734 GO:0005515
Vra3g1149 1849 MobiDBLite consensus disorder prediction 1 21 - -
Vra3g1149 1849 MobiDBLite consensus disorder prediction 1758 1785 - -
Vra3g1149 1849 MobiDBLite consensus disorder prediction 140 165 - -
Vra3g1149 1849 MobiDBLite consensus disorder prediction 1758 1849 - -
Vra3g1149 1849 Pfam Translation initiation factor eIF3 subunit 135 706 849 IPR033646 -
Vra3g1149 1849 MobiDBLite consensus disorder prediction 1238 1288 - -
Vra3g1149 1849 MobiDBLite consensus disorder prediction 1816 1836 - -
Vra3g1149 1849 Pfam Tetratricopeptide repeat 919 989 - -
Vra3g1149 1849 Pfam Tetratricopeptide repeat 1003 1077 - -
Vra3g1149 1849 MobiDBLite consensus disorder prediction 1614 1639 - -
Vra3g1149 1849 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 1 1778 IPR027523 GO:0006996
Vra3g1149 1849 MobiDBLite consensus disorder prediction 1533 1575 - -
Vra3g1149 1849 Gene3D Tetratricopeptide repeat domain 874 1124 IPR011990 GO:0005515
Vra3g1149 1849 MobiDBLite consensus disorder prediction 618 647 - -
Vra3g1149 1849 MobiDBLite consensus disorder prediction 1165 1204 - -
Vra3g1149 1849 SUPERFAMILY TPR-like 886 991 IPR011990 GO:0005515
Vra3g1149 1849 MobiDBLite consensus disorder prediction 1205 1220 - -
Vra3g1149 1849 Coils Coil 539 559 - -
Vra3g1149 1849 MobiDBLite consensus disorder prediction 128 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1149 Vra-Chr3 12096886 12113237 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1149 K03255 - gmx:100806823 3158.62