Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1161 ATGGCGCGGCGGCAAAGACGGTTTGACAGAGATGGCACGATAGCAGCGTTATCGCGTGGAGGCAGAGACAGAGAAAAGCTTCAGAATCGCGTGGAGAAGATGAACTGTTCTATGAAAAAAGTGAGCATGAAGAAGGCTTTAAAGTTGTCAAAATTCAGTGGTGAACTTAAGGGACTAGATGCAGCAATTGCTAAGGCAACTAGCTATAAGCACGCATTACCAAAGGAAAAGCACATTCGTACAATTTTTCATTCACTGTCTCCGTCAAAACCTCGCAGTGAGGTGATTTACTGTATAGAGGGTCTTACAAAGCGTTTTAGCCATACTAATAATTGGAGTGTTGCCATGAAATCACTTTTAGTCTTACATCGTGCCATTAGGGAACTTGACTCTTCAATTTTTGAAGAGCTTCTCCACTATCGCAATTCAAAAGGTTACATCATTGACTTCTCATTCTTTCATGGAACATCAGCCCCCACCGATTTTTCCATTTGGATTCGTCATTATGCCCTCTACCTTGAAGAACGCATACAATGTTTCAATGTAATAAACTATGACGCTGCAACAAATAGCTCGGTTGCTGGTGAAAGTGTCAAACTATATGTTGCAATAACTATTAGAGTGGTTGAATTGCTCGACAAGTTTTTCGAGATGTACCATGATGACGCTCGTAGTTCACTTCGAATTTATAAAAAATCAGTGACTCAGGCAGAAAGGTTATCCGAGTTCTTTGATACTTGCAAAAGATTAGAATTTGGAAGGGGGAGAAAATTCATCAATATTAAAATGCCTCCTGCTTCTTTTATTACTACCATGGAGGAATATATTAAGGAGGCTCCAAGCTCCTTAATGCTTGAAGACAACATGGATGACAACAGTAAAAGACTTATCAACAGCAACCATGCAAGTTCAACGGGTGATATCTTGTCTATTAATGACGATGTTGTTGATAAGCCAACAAATGCTTCTACTGAAAATAACATTGTTGTGCCACAACCTGCTGAACTTATGGGTTTGCATGACTTACTCACAGGAGCATCTGAATTTGAAGAGAAATCTCTGGCAATGACATTTATCCCAAGTGAAAACGATGAGAATCGGACAAGCCCAGAACTAGGTTGGGAGGTTGCACTTTTTACTGAACCAGAAAATGATAATGGGAATATAATAACAACTGAAATGGAGAATAATAGAGAGGTTGGTGGAATGGAGTTATGGAAAGATGATGATGAGACAGAAGAAAGTGTAAGTCAGTTTAGTAGGAAAGTAAGGTTGAATCCTTTTGACATGGAGGGTAGTGATCATCATGATGAGCAATTTAACATGGCATCTTCAAATTCACTTCCTAACATTCCATATCAAATGGGTGACATGCCTTACCAACATTTAGTGCAGCAACCAAGAAAAACAGTCAATCCTTTTGATGAAACAAACATCTTTCCTTCAACTCTGCCAACACACCCAACCCAAACTAGATAG 1479 0.3942 MARRQRRFDRDGTIAALSRGGRDREKLQNRVEKMNCSMKKVSMKKALKLSKFSGELKGLDAAIAKATSYKHALPKEKHIRTIFHSLSPSKPRSEVIYCIEGLTKRFSHTNNWSVAMKSLLVLHRAIRELDSSIFEELLHYRNSKGYIIDFSFFHGTSAPTDFSIWIRHYALYLEERIQCFNVINYDAATNSSVAGESVKLYVAITIRVVELLDKFFEMYHDDARSSLRIYKKSVTQAERLSEFFDTCKRLEFGRGRKFINIKMPPASFITTMEEYIKEAPSSLMLEDNMDDNSKRLINSNHASSTGDILSINDDVVDKPTNASTENNIVVPQPAELMGLHDLLTGASEFEEKSLAMTFIPSENDENRTSPELGWEVALFTEPENDNGNIITTEMENNREVGGMELWKDDDETEESVSQFSRKVRLNPFDMEGSDHHDEQFNMASSNSLPNIPYQMGDMPYQHLVQQPRKTVNPFDETNIFPSTLPTHPTQTR* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1161 492 PANTHER CLATHRIN ASSEMBLY PROTEIN 47 190 - -
Vra3g1161 492 PANTHER CLATHRIN ASSEMBLY PROTEIN 191 477 - -
Vra3g1161 492 SUPERFAMILY GAT-like domain 192 278 - -
Vra3g1161 492 ProSiteProfiles ENTH domain profile. 51 187 IPR013809 -
Vra3g1161 492 SUPERFAMILY ENTH/VHS domain 58 186 IPR008942 -
Vra3g1161 492 SMART enth_2 57 187 IPR013809 -
Vra3g1161 492 CDD ANTH_N 59 180 - -
Vra3g1161 492 Pfam ANTH domain 193 278 IPR011417 GO:0005543
Vra3g1161 492 Pfam ANTH domain 59 187 IPR011417 GO:0005543
Vra3g1161 492 Coils Coil 24 44 - -
Vra3g1161 492 Gene3D - 32 184 IPR008942 -
Vra3g1161 492 Gene3D ANTH domain 185 280 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Vra3g1161 492 PANTHER CLATHRIN ASSEMBLY PROTEIN 47 190 IPR045192 GO:0048268|GO:0072583
Vra3g1161 492 PANTHER CLATHRIN ASSEMBLY PROTEIN 191 477 IPR045192 GO:0048268|GO:0072583
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1161 Vra-Chr3 12251616 12264735 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1161 K20043 - vun:114162899 454.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2291 7 42998210 43003732 Vra3g1161 3 12251616 12264735 PCT