Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1878 ATGGCAGAAAGCATCACGTGTTCTGTGATATCTCGAAGTAAAAGTGATGTAATAGCAATGAAGGAGACGCTTCGTGCCCAGCAGCAACTTCTGGAAAAGCTATATGCTGAGTTGGATGAGGAAAGAGAAGCTTCAGCTACAGCAGCGAGTGAAACACTGGACATGATACTGCGTTTGCAAGGAGAGAAGGCTGTGGTGAAGATGGAGGCAAGTCACTACAAGAGGGTGGCAGAGGAGAAGATAGGCCATGCCGAGGCCTCTATTGAGGCTTTTGAGGAGCTTATGTATCAGAAGGAAATGCAAATTGCTTCTCTGGAGTTTCAAGTCCAGGCTTATAGACACAAACTTATGAGCTTGGGGTGTGAACTCAGTGGCAGTGAGTTTGAGTTGCAAGAGGATCTGCTGTTGAATAGAAGTGACaaaagaaatggagaaaatGGGGGTCAAAGTAGCACTGTTAGAAGGCTGCATTCAATGCCCCCAATTCAGATTATGAGTTCCCTGAGAGCTGCTGGAAAGAGGGAAAGATCACCTAGTCCGGTTCTTGAGGTGATTCCTAAGGTGGTAGAGGAGAGCGCTGACGAGGAACTTGCTCCACCTGGCTTGGATTTAACAAGAAAGTCAGTTGAATTTGCATCTGGCAGTGGAACTCTTGATTCATATTTGAACCAGATAAAGGAATTGAATGAACAAGTGAGGGTGATTTCAGATTGTGCTGAAGGAGAAAAGAATGCAAATTTGACTAGTAGAAGAGGGAGGTGTTGTTCAATTTTCTCGCAGGCTAGCACCAAGATGACCTGTGATCAAACAGACAGATTGCTCTCTACTAATTTAGATGATGTAAGTCATGGTGGAAGTACACACCATAGAGAAGGAAATGCTATTGATTCTCCTCGCTTGCTTAATGTCCATGATGTCTATGAAGTCCCACAAACCAGTGAAAAGCATGAAGTCAGTGAACATGGGGAAAAAAGGCTTGAGAAATGGAATTCTGATGCAGAGAACAGATTAACAAAACCAGATTCTGTGTCTGAGGGAATGGTGGAATCGCATGTTAAACATGGtgcagaaaagaaaaagggtatGTTTAAAGTACATCGTGAAATCAAAACTCCTTGTCCTAAAGATATGACTATCATTGGCCAGAAGAAAGAGGGGATGGGTGTGGATTGCAATTCTCAAGCTGAGTTTCAAAAGTTGAATCAGAGAATTGAGAGGCTTGAGAGGGAGAGAGTTAGTGCAAGGCAAGAGATTACCCATGAAGGGAATGGTGAAGAGCAGTTGAGGCTGTTGAAGGACATACAAAGTCAACTCCAATTAATGCAATCAGAGATGAGAAGCTTGAAGACCAAAAAAGCCACTCCTAAGGATGATGTGTCTTTGGCTTCTCTCCAAGAGGCAATGTTGCATTTTTGGCTTTGA 1422 0.4255 MAESITCSVISRSKSDVIAMKETLRAQQQLLEKLYAELDEEREASATAASETLDMILRLQGEKAVVKMEASHYKRVAEEKIGHAEASIEAFEELMYQKEMQIASLEFQVQAYRHKLMSLGCELSGSEFELQEDLLLNRSDKRNGENGGQSSTVRRLHSMPPIQIMSSLRAAGKRERSPSPVLEVIPKVVEESADEELAPPGLDLTRKSVEFASGSGTLDSYLNQIKELNEQVRVISDCAEGEKNANLTSRRGRCCSIFSQASTKMTCDQTDRLLSTNLDDVSHGGSTHHREGNAIDSPRLLNVHDVYEVPQTSEKHEVSEHGEKRLEKWNSDAENRLTKPDSVSEGMVESHVKHGAEKKKGMFKVHREIKTPCPKDMTIIGQKKEGMGVDCNSQAEFQKLNQRIERLERERVSARQEITHEGNGEEQLRLLKDIQSQLQLMQSEMRSLKTKKATPKDDVSLASLQEAMLHFWL 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1878 473 Coils Coil 21 51 - -
Ssu1g1878 473 Coils Coil 431 451 - -
Ssu1g1878 473 MobiDBLite consensus disorder prediction 311 349 - -
Ssu1g1878 473 MobiDBLite consensus disorder prediction 311 339 - -
Ssu1g1878 473 Coils Coil 397 417 - -
Ssu1g1878 473 Pfam Zein-binding 19 109 IPR007656 -
Ssu1g1878 473 PANTHER BNAANNG28530D PROTEIN 10 466 - -
Ssu1g1878 473 Coils Coil 74 94 - -
Ssu1g1878 473 PANTHER OS08G0442350 PROTEIN 10 466 - -
Ssu1g1878 473 ProSiteProfiles GTD-binding domain profile. 15 113 IPR007656 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1878 Ssu-Chr1 49328399 49330068 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1878 - - gmx:100814055 697.197