Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00928 ATGCATAATTATGGTGGTTATGGTGATTTTAAGCCTTTTGATAATGTTAAATGTTGTTACATGGTAATAGGCGTGGAGCATCGGACTAGGTTGGCTAGGTTGGGTTACTCGGGTCGTGGTGCCAAGCTGCTTGGCCAAGCTAGGCTTGCTAGGCTTGTTGGGTTGTTTTTGTTCAAGCTGTTATGGAGCTCGATCCGTGAGGTCTTTGATCGTGGTCGAGCTGTTGAAGTGGTTGACCGAGTTGTTTTGAGAGGTAGTTGTTACAGTGAGTTGTCGAGTTATATCATTGTTGTTTGTTCAGTGGATGTTGTCAACACATTCGAGTGTTATGTCTTTGCTCTTATGAAGCAAACAATTTATACTCATAAGGCTTTTGGAAAGCAGGGGAAACGAGTCTTGACTATAAGGCTTTTTTGGAGTAGGCATGATAACCCTAACCGTAAAACTATTGTGGAGCAGGCAGGCGAAAACAAAGCGCTGTTGACCCTCTCGCCGGAAAAAACAGTTAGTTATTTTCCGGCGAGCGTGGAGGAACGGTCGCGGGAAAAGAGGGAAGAGGAAGAGAATGGGGAAAAGGAGATTGTTCATCTTAGATCATTACCGGTCGGAGTGGTCCGTGAAGGAGGCATTGTTGAGCGTCTTCATGTGGCACAACGAAACGCTCAATGTTTGGACGCATTTGGTTGGGTTTCTTATATTTGCGGCGATGGCAATGGTCGGATGTTGTTTTCCGAGTATCTTCAGGGTAGGGGCAATGGAGATGGAGCTGTTCATTATGGGAAAGGAATTCAATGGTTCTCTTCCGGTCACTACTGGATTCTTGAAGCAGAAATAATTCCTAGATGGCCGTGGTTTGTTTTCTTAGCTGGAGGAATGGGCTGCTTGGCTTTCAGTAGTATTTCCCATCTAATGGCATGTCACTCAAAATGCTTCAACCTGTTTTTCTGGCGTCTAGATTATGTAGGAATTTCTCTCATGATAGTTTGCTCCTTCTATGCTCCAATTTACTATGTCTTTTTCTGCAATCCTCACATAAGGACATTCTACTTGTCCTCAATAACTGCGTTTGGAGTCCTCGCCACCATAACCCTTCTCGCCCCTTCACTTTCTTCCCCTCACTTGCGACCCTTCAGAGCTTGTTTATTTCTTTCCATGGGATTTTCAGGTGTCATTCCTGCAGTTCATGCTCTTGTGACCCATTGGGAGCACCCACAGGTTGTTGTTGCACTAGGATTTGAGCTTCTAATGGCCATTCTATATGCCACTGGAGCTGTGTTCTATGTCACTAGAATACCAGAGCGATGGAAGCCTGGGGCATTTGATATTGCAGGTCATAGTCATCAGATTTTTCATGTTTTTGTTCTTCTTGGGGCGCTTGCACATACTCAAGCCACGCTGCTAGTCATGGAATTTCGAAGGGGATCGCCCACATGTGCATTTTAG 1443 0.4505 MHNYGGYGDFKPFDNVKCCYMVIGVEHRTRLARLGYSGRGAKLLGQARLARLVGLFLFKLLWSSIREVFDRGRAVEVVDRVVLRGSCYSELSSYIIVVCSVDVVNTFECYVFALMKQTIYTHKAFGKQGKRVLTIRLFWSRHDNPNRKTIVEQAGENKALLTLSPEKTVSYFPASVEERSREKREEEENGEKEIVHLRSLPVGVVREGGIVERLHVAQRNAQCLDAFGWVSYICGDGNGRMLFSEYLQGRGNGDGAVHYGKGIQWFSSGHYWILEAEIIPRWPWFVFLAGGMGCLAFSSISHLMACHSKCFNLFFWRLDYVGISLMIVCSFYAPIYYVFFCNPHIRTFYLSSITAFGVLATITLLAPSLSSPHLRPFRACLFLSMGFSGVIPAVHALVTHWEHPQVVVALGFELLMAILYATGAVFYVTRIPERWKPGAFDIAGHSHQIFHVFVLLGALAHTQATLLVMEFRRGSPTCAF 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00928 480 Pfam Haemolysin-III related 279 461 IPR004254 GO:0016020
Vimu10g00928 480 PANTHER ADIPOR/PROGESTIN RECEPTOR-RELATED 279 473 IPR004254 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00928 Vimu-Chr10 8341479 8347905 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00928 K07297 - gmx:100809900 384.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00928 10 8341479 8347905 Vimu10g00928 10 8341479 8347905 ECH
Vimu7g01078 7 10630801 10648633 Vimu10g00928 10 8341479 8347905 PCT