Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi3g0343 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0344 . . . . . Adu01g00878 Aed5g0342 Aed9g0002 Aev04g3414 . Ahy13g0771 . Aip03g00811 . . . Amo13g0813 . . Apr5g1889 . Arst1g01189 . . . Bisa01g4217 . . . . Cca04g00371 Cca07g00007 . Dere13g0857 Dod03g3220 . . . . Glsi09g0739 Gma04g00005 Gma06g00002 . Gma12g00328 Gso4g0002 Gso4g0002 . Gso4g0002 . . . . . . . . . . . . Lapu9g02525 . Lasa5g04845 Lasa2g03559 . . . . . . . . Lja3g0433 . Mal7g2630 . Mepo3g08071 Mepo1g02260 . . . . Mtr4g2171 . Phac9g01864 Phac3g04250 Phco7g00015 Phco8g00313 . . . Psa2g3357 . Pste7g02018 . . . . . . Pvu9g1186 Pvu3g2794 . . . . Spst9g00002 Spst3g03704 . . . Sto10g0007 Tpr3g2413 . Trre5g06000 Trre15g02489 Tsu02g02502 . . . . . Vimu10g03774 Vimu7g03206 . . . Vivi1g03264 . Vra5g1895
Vvi3g0345 . Acco11g2483 . Accr9g00019 . Adu05g00311 . . . . . . . . . Alju09g2488 . . . . . Arst5g00389 . Bach4g00838 . Bisa11g1935 . . . . . . . Dere09g1204 . . . Enph13g0769 . Glsi05g1210 . . . . . . . . . . . . . . . . . . . . . Lapu2g01007 . Lasa2g03560 . . . . Lele49g0008 Lele50g0011 Lele51g0011 Lele52g0010 . . . . . Mepo5g01124 . Mesa17g01191 . Mibi12g2165 . . . Phac2g01862 . Phco4g00745 . Prci10g0021 . Psa2g3355 . Pste1g03424 . . . . . Pumo8g01618 . Pvu2g1222 . Rops1g01430 . Seca10g01121 . Spst2g01021 . . . . . . . Trre9g01441 . . . Vian10g00907 . Vifa1g06293 . Vimu7g03207 . Viun2g01702 . Vivi2g02730 . .
Vvi3g0346 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0347 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0348 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0349 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0350 . . . . . Adu03g00521 . . . . . . . . . . . . . . . Arst3g00691 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu11g00787 . . . . . . . . . . . . . . . Mepo2g02358 . Mesa13g02724 . . . . . Phac11g01801 . Phco9g00472 . . . . . Pste1g01715 . . . . . . . Pvu11g0427 . Rops3g00513 . . . Spst2g02563 . . . . . . . . . . . . . . . Vimu5g02379 . . . . . .
Vvi3g0351 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0352 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 315 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Adu Adu03g00521 Chr03 4854884 4856848 +
Arst Arst3g00691 Chr3 4860875 4862824 +
Lapu Lapu11g00787 Chr11 10704041 10706530 +
Mepo Mepo2g02358 Chr2 33369450 33371556 +
Mesa Mesa13g02724 Chr13 31979603 31981361 -
Phac Phac11g01801 Chr11 24041444 24042555 -
Phco Phco9g00472 Chr9 3452525 3454704 -
Pste Pste1g01715 Chr1 5276575 5278691 -
Pvu Pvu11g0427 Chr11 3623925 3626280 -
Rops Rops3g00513 Chr3 6528153 6529992 -
Spst Spst2g02563 Chr2 25362310 25364440 +
Vimu Vimu5g02379 Chr5 34524383 34526456 +
Vvi Vvi3g0343 Chr3 2873799 2874188 +
Vvi Vvi3g0344 Chr3 2876197 2880912 -
Adu Adu01g00878 Chr01 11637041 11642113 -
Aed Aed5g0342 Chr5 2403087 2404903 -
Aed Aed9g0002 Chr9 11579 19430 +
Aev Aev04g3414 Chr04 32742812 32745250 -
Ahy Ahy13g0771 Chr13 8076560 8079190 -
Aip Aip03g00811 Chr03 7851814 7854587 -
Amo Amo13g0813 Chr13 10118265 10121129 -
Apr Apr5g1889 Chr5 21919976 21926573 -
Arst Arst1g01189 Chr1 11634649 11639304 -
Bisa Bisa01g4217 Chr01 100701100 100728128 -
Cca Cca04g00371 Chr04 3738631 3740651 -
Cca Cca07g00007 Chr07 155483 161716 +
Dere Dere13g0857 Chr13 10789443 10794861 -
Dod Dod03g3220 Chr03 64799754 64801013 -
Glsi Glsi09g0739 Chr09 5058717 5061723 -
Gma Gma04g00005 Chr04 34292 46137 +
Gma Gma06g00002 Chr06 16729 22579 +
Gma Gma12g00328 Chr12 2718949 2721517 -
Gso Gso4g0002 Chr4 34839 47506 +
Gso Gso4g0002 Chr4 34839 47506 +
Gso Gso4g0002 Chr4 34839 47506 +
Lapu Lapu9g02525 Chr9 39493211 39499184 -
Lasa Lasa5g04845 Chr5 700061888 700066619 -
Lasa Lasa2g03559 Chr2 541391503 541394054 -
Lja Lja3g0433 Chr3 4430453 4433237 -
Mal Mal7g2630 Chr7 88386298 88388897 +
Mepo Mepo3g08071 Chr3 93444188 93450344 -
Mepo Mepo1g02260 Chr1 23255190 23259347 -
Mtr Mtr4g2171 Chr4 35295148 35297530 +
Phac Phac9g01864 Chr9 15619178 15625111 -
Phac Phac3g04250 Chr3 41189317 41193552 -
Phco Phco7g00015 Chr7 97120 102212 +
Phco Phco8g00313 Chr8 2887582 2890943 +
Psa Psa2g3357 Chr2 378238720 378242191 +
Pste Pste7g02018 Chr7 18544048 18548895 -
Pvu Pvu9g1186 Chr9 17298710 17304455 +
Pvu Pvu3g2794 Chr3 49758785 49761900 -
Spst Spst9g00002 Chr9 34221 39411 +
Spst Spst3g03704 Chr3 87048097 87051557 +
Sto Sto10g0007 Chr10 80458 87430 +
Tpr Tpr3g2413 Chr3 22966569 22969616 +
Trre Trre5g06000 Chr5 59241650 59246392 -
Trre Trre15g02489 Chr15 20781925 20786209 +
Tsu Tsu02g02502 Chr02 25751659 25760255 +
Vimu Vimu10g03774 Chr10 46435061 46439714 -
Vimu Vimu7g03206 Chr7 27129323 27132884 -
Vivi Vivi1g03264 Chr1 70902987 70906865 -
Vra Vra5g1895 Chr5 24711067 24716402 -
Vvi Vvi3g0345 Chr3 2885284 2887669 +
Acco Acco11g2483 Chr11 37850621 37854493 +
Accr Accr9g00019 Chr9 262826 272058 -
Adu Adu05g00311 Chr05 3340394 3344068 -
Alju Alju09g2488 Chr09 47699501 47703728 +
Arst Arst5g00389 Chr5 3359651 3363415 -
Bach Bach4g00838 Chr4 5560925 5563110 +
Bisa Bisa11g1935 Chr11 41743585 41747895 +
Dere Dere09g1204 Chr09 15938586 15942595 +
Enph Enph13g0769 Chr13 14061131 14066023 -
Glsi Glsi05g1210 Chr05 61675169 61679997 -
Lapu Lapu2g01007 Chr2 9463663 9468560 -
Lasa Lasa2g03560 Chr2 541513442 541518828 +
Lele Lele49g0008 Chr49 70200 74713 -
Lele Lele50g0011 Chr50 111973 114671 -
Lele Lele51g0011 Chr51 74819 79038 -
Lele Lele52g0010 Chr52 87542 89868 -
Mepo Mepo5g01124 Chr5 11350207 11357269 +
Mesa Mesa17g01191 Chr17 15306525 15309254 +
Mibi Mibi12g2165 Chr12 38122364 38126477 +
Phac Phac2g01862 Chr2 20804213 20808464 +
Phco Phco4g00745 Chr4 5736220 5740114 -
Prci Prci10g0021 Chr10 181897 184314 -
Psa Psa2g3355 Chr2 378178943 378185543 -
Pste Pste1g03424 Chr1 15912593 15916674 +
Pumo Pumo8g01618 Chr8 51513866 51518465 -
Pvu Pvu2g1222 Chr2 23956053 23959734 +
Rops Rops1g01430 Chr1 31733628 31737680 -
Seca Seca10g01121 Chr10 10789067 10793850 +
Spst Spst2g01021 Chr2 8874881 8882681 +
Trre Trre9g01441 Chr9 12315539 12321456 +
Vian Vian10g00907 Chr10 9247058 9250977 +
Vifa Vifa1g06293 Chr1 983633173 983638285 -
Vimu Vimu7g03207 Chr7 27147142 27151859 +
Viun Viun2g01702 Chr2 26578173 26582406 -
Vivi Vivi2g02730 Chr2 122290418 122296621 -
Vvi Vvi3g0346 Chr3 2890432 2895797 +
Vvi Vvi3g0347 Chr3 2896660 2898269 -
Vvi Vvi3g0348 Chr3 2901247 2901702 -
Vvi Vvi3g0349 Chr3 2903559 2909275 +
Vvi Vvi3g0350 Chr3 2911408 2912744 +
Adu Adu03g00521 Chr03 4854884 4856848 +
Arst Arst3g00691 Chr3 4860875 4862824 +
Lapu Lapu11g00787 Chr11 10704041 10706530 +
Mepo Mepo2g02358 Chr2 33369450 33371556 +
Mesa Mesa13g02724 Chr13 31979603 31981361 -
Phac Phac11g01801 Chr11 24041444 24042555 -
Phco Phco9g00472 Chr9 3452525 3454704 -
Pste Pste1g01715 Chr1 5276575 5278691 -
Pvu Pvu11g0427 Chr11 3623925 3626280 -
Rops Rops3g00513 Chr3 6528153 6529992 -
Spst Spst2g02563 Chr2 25362310 25364440 +
Vimu Vimu5g02379 Chr5 34524383 34526456 +
Vvi Vvi3g0351 Chr3 2913336 2918332 -
Vvi Vvi3g0352 Chr3 2918806 2921293 -
Lasa Lasa5g04845 Chr5 700061888 700066619 -
Adu Adu03g00521 Chr03 4854884 4856848 +
Arst Arst3g00691 Chr3 4860875 4862824 +
Lapu Lapu11g00787 Chr11 10704041 10706530 +
Mepo Mepo2g02358 Chr2 33369450 33371556 +
Mesa Mesa13g02724 Chr13 31979603 31981361 -
Phac Phac11g01801 Chr11 24041444 24042555 -
Phco Phco9g00472 Chr9 3452525 3454704 -
Pste Pste1g01715 Chr1 5276575 5278691 -
Pvu Pvu11g0427 Chr11 3623925 3626280 -
Rops Rops3g00513 Chr3 6528153 6529992 -
Spst Spst2g02563 Chr2 25362310 25364440 +
Vimu Vimu5g02379 Chr5 34524383 34526456 +
Lasa Lasa2g03559 Chr2 541391503 541394054 -
Psa Psa2g3357 Chr2 378238720 378242191 +
Spst Spst3g03704 Chr3 87048097 87051557 +
Vimu Vimu7g03206 Chr7 27129323 27132884 -
Acco Acco11g2483 Chr11 37850621 37854493 +
Accr Accr9g00019 Chr9 262826 272058 -
Adu Adu05g00311 Chr05 3340394 3344068 -
Alju Alju09g2488 Chr09 47699501 47703728 +
Arst Arst5g00389 Chr5 3359651 3363415 -
Bach Bach4g00838 Chr4 5560925 5563110 +
Bisa Bisa11g1935 Chr11 41743585 41747895 +
Dere Dere09g1204 Chr09 15938586 15942595 +
Enph Enph13g0769 Chr13 14061131 14066023 -
Glsi Glsi05g1210 Chr05 61675169 61679997 -
Lapu Lapu2g01007 Chr2 9463663 9468560 -
Lasa Lasa2g03560 Chr2 541513442 541518828 +
Lele Lele49g0008 Chr49 70200 74713 -
Lele Lele50g0011 Chr50 111973 114671 -
Lele Lele51g0011 Chr51 74819 79038 -
Lele Lele52g0010 Chr52 87542 89868 -
Mepo Mepo5g01124 Chr5 11350207 11357269 +
Mesa Mesa17g01191 Chr17 15306525 15309254 +
Mibi Mibi12g2165 Chr12 38122364 38126477 +
Phac Phac2g01862 Chr2 20804213 20808464 +
Phco Phco4g00745 Chr4 5736220 5740114 -
Prci Prci10g0021 Chr10 181897 184314 -
Psa Psa2g3355 Chr2 378178943 378185543 -
Pste Pste1g03424 Chr1 15912593 15916674 +
Pumo Pumo8g01618 Chr8 51513866 51518465 -
Pvu Pvu2g1222 Chr2 23956053 23959734 +
Rops Rops1g01430 Chr1 31733628 31737680 -
Seca Seca10g01121 Chr10 10789067 10793850 +
Spst Spst2g01021 Chr2 8874881 8882681 +
Trre Trre9g01441 Chr9 12315539 12321456 +
Vian Vian10g00907 Chr10 9247058 9250977 +
Vifa Vifa1g06293 Chr1 983633173 983638285 -
Vimu Vimu7g03207 Chr7 27147142 27151859 +
Viun Viun2g01702 Chr2 26578173 26582406 -
Vivi Vivi2g02730 Chr2 122290418 122296621 -
Adu Adu03g00521 Chr03 4854884 4856848 +
Arst Arst3g00691 Chr3 4860875 4862824 +
Lapu Lapu11g00787 Chr11 10704041 10706530 +
Mepo Mepo2g02358 Chr2 33369450 33371556 +
Mesa Mesa13g02724 Chr13 31979603 31981361 -
Phac Phac11g01801 Chr11 24041444 24042555 -
Phco Phco9g00472 Chr9 3452525 3454704 -
Pste Pste1g01715 Chr1 5276575 5278691 -
Pvu Pvu11g0427 Chr11 3623925 3626280 -
Rops Rops3g00513 Chr3 6528153 6529992 -
Spst Spst2g02563 Chr2 25362310 25364440 +
Vimu Vimu5g02379 Chr5 34524383 34526456 +