Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g0857 ATGAGGGAAGTTGTGATTGTTGCGGTTTCTTCAACACTTGGAAATTTGTTAATTGGATGGGATAGTTCAACCATTGCAGGAGGCATGTCGTACATGAAGCAAGAGTTCAAGTTAGACAGCAATCCCAGAATGGAAGGGATGATTGTGTCGATGACGTTTCTGGCGGGAACAATCATGACGACGTTCTCCGGGAGCGCAAGCGACATGTTCGGACGACGTACGATGTTGGTGATATCATCGATGACGTACTTCGTGAGCGGTCTGGTCATGCTGTGGGCCCCGAACGTGTACGTGGTTCTTCTGTCGAGGCTACTGAGTGGAGTCGCCATCGCTCTCGCCGTCACTCTCACTCCTCTCTACATCTCCGAGATCTCGCCGCCTGATATCAGAGGCCAACTCAGCACTGTGACGCAGTTTTCGTGTTCCTTTGGAATGTTCCTGGCCTACTGTCTGGTGTTTTCGATGTCGTTGATGGAATCGCCGAGTTGGAGACTCATGCTTGGCATTATATCTGTTCCTGCTGTTGCTTATTTTCTTCTTACTATGTTCTACCTTCCTGAATCTCCTCGATGGCTTGTCACTAAAGGCCGAGTTGCTGAGGCCAGAAAGGTCTTGCAGAGAATACGTGGCGCCCAGGATGTTTCAGGTGAGCTGGCATTGCTAGTGGAGGGTCTAAACCCAGGGGGTGAATGCACAAGCATAGAGGAGTACATAGTAGCACCAGCCAGTGAGGCCAGTGGGATCATGGAAGCAGGGAAAGACTGCATAAAGCTGTACGGACCCAACGAAGGAGGAGTATCAATGGTGGCCCAACCAGTAAGCGTACAGGGAAGCAGCATGATGCTCATGTCTGGCCAAGGAAGCATCCTCCAAAGCCCCAATATCAAGGACCCCATCGTCAATCTCTTCGGAAGCATGCACGAGAATCTCTCCGACGCCGCCGGTAGCGGCATGAACCTCACCACCGTGGCCGACGATCCCACCGGCACCAGCGACAACCTCCATCTTCAGACTCCATTGTTGCTCTCGCGCCAGCCTAGTGCCAGGGATCCCCCAGTGGCTGTACCTGGAAACACAGACATAGGAGGAGGATGGAAGTTAGTGTACAAAGAAGGAGGTCCAGGAGGAGGTCAGTATCAGAGGGTGTATTTGCGGGCAGAGGCAGGAGGAGCATCAGGGGGTGTGGTTTCCCAGAGAGCTTCTTCGTTTCTGTCGACTTCAGGGTTGGAGTTGAGTGTGGACGCGGAAGGGTCGGCGTTTTCGGCGTCGGCGCTGGTTAGCCGGTCGGTTCTTGGGACTAGTAAGGATATGGCGAAGGTGATGAATGAATTAGCTGCGGAAGATGTTGCTGCTAAAGCTTCTGGTTGGAAGGCCTTGTTGGAGCCTGGGGTCAAGCGTGCTTTGATTGTTGGAATTGGACTTCAAGCTCTTCAGCAGGCTGCAGGTATAAATGGATTTCTGTATTATGGTCCTCAGGTTCTTGAAAAGGCAGGAATAGGGGCACTTCTGTCCAATTTGGGGATTAGTTCAACATCTGCTTCCTTACTTGTGAACATCGTCATAACATTCTTTATGCTTCCTTGTATAGCTCTTTCCATGAAACTCATGGATATTTCTGGCAGAAGGGCAATAATGCTGAACACCTTGCCGATTCTGATAGTGTGTCTGGTAATGCTAGTGGTGCGAGACTACATGAACATCAGTCCGATGCTGAACGCAGCCATAACTGCTCTGAGCGTAGTGGTGTACGAGAGCGTCTTCTGCATGGGGTTCGGAGTGATTCCGAACATCCTGTGTGCAGAAATCTTCCCCACCAGTGTTCGTGGAATCTGCATCTCCATATGCTGCGTCGCCTTCTGGATCGCCACCTTGATCCTCACTTCCATATTCCCTTCCTTGCTTCAGATTCTCGGCCTCTCCGGCGTGTTTGGACTGTTCGTTGTTGGATGCATCGTCTCCTGGGTTTTTGTTTACTTGAAGGTCCCTGAAACTAAAGGCATGCCTCTGGAGGTCATCATTGAGTTCTTCGCCATTGGTGCCAAGCCTGGTACTGATCCTACCACCCTTTCTGGGATCAGAGACTAA 2085 0.5113 MREVVIVAVSSTLGNLLIGWDSSTIAGGMSYMKQEFKLDSNPRMEGMIVSMTFLAGTIMTTFSGSASDMFGRRTMLVISSMTYFVSGLVMLWAPNVYVVLLSRLLSGVAIALAVTLTPLYISEISPPDIRGQLSTVTQFSCSFGMFLAYCLVFSMSLMESPSWRLMLGIISVPAVAYFLLTMFYLPESPRWLVTKGRVAEARKVLQRIRGAQDVSGELALLVEGLNPGGECTSIEEYIVAPASEASGIMEAGKDCIKLYGPNEGGVSMVAQPVSVQGSSMMLMSGQGSILQSPNIKDPIVNLFGSMHENLSDAAGSGMNLTTVADDPTGTSDNLHLQTPLLLSRQPSARDPPVAVPGNTDIGGGWKLVYKEGGPGGGQYQRVYLRAEAGGASGGVVSQRASSFLSTSGLELSVDAEGSAFSASALVSRSVLGTSKDMAKVMNELAAEDVAAKASGWKALLEPGVKRALIVGIGLQALQQAAGINGFLYYGPQVLEKAGIGALLSNLGISSTSASLLVNIVITFFMLPCIALSMKLMDISGRRAIMLNTLPILIVCLVMLVVRDYMNISPMLNAAITALSVVVYESVFCMGFGVIPNILCAEIFPTSVRGICISICCVAFWIATLILTSIFPSLLQILGLSGVFGLFVVGCIVSWVFVYLKVPETKGMPLEVIIEFFAIGAKPGTDPTTLSGIRD 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g0857 694 ProSiteProfiles Major facilitator superfamily (MFS) profile. 7 665 IPR020846 GO:0022857
Dere13g0857 694 PRINTS Sugar transporter signature 577 598 IPR003663 GO:0016020|GO:0022857|GO:0055085
Dere13g0857 694 PRINTS Sugar transporter signature 15 25 IPR003663 GO:0016020|GO:0022857|GO:0055085
Dere13g0857 694 PRINTS Sugar transporter signature 478 488 IPR003663 GO:0016020|GO:0022857|GO:0055085
Dere13g0857 694 PRINTS Sugar transporter signature 600 612 IPR003663 GO:0016020|GO:0022857|GO:0055085
Dere13g0857 694 PRINTS Sugar transporter signature 100 119 IPR003663 GO:0016020|GO:0022857|GO:0055085
Dere13g0857 694 PANTHER PROTON MYO-INOSITOL COTRANSPORTER 4 677 - -
Dere13g0857 694 Gene3D MFS general substrate transporter like domains 2 247 IPR036259 -
Dere13g0857 694 FunFam Monosaccharide-sensing protein 3 2 249 - -
Dere13g0857 694 SUPERFAMILY MFS general substrate transporter 7 670 IPR036259 -
Dere13g0857 694 Pfam Sugar (and other) transporter 8 225 IPR005828 GO:0016020|GO:0022857|GO:0055085
Dere13g0857 694 Pfam Sugar (and other) transporter 429 673 IPR005828 GO:0016020|GO:0022857|GO:0055085
Dere13g0857 694 Gene3D MFS general substrate transporter like domains 419 678 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g0857 Dere-ChrDere13 10789443 10794861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g0857 51 681 Organic Solute Cotransporters AT3G51490 49.271 0.0 605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0017 04 285129 290203 Dere13g0857 13 10789443 10794861 CCT
Dere13g0857 13 10789443 10794861 Dere13g0857 13 10789443 10794861 ECH
Dere13g0857 13 10789443 10794861 Dere04g0017 04 285129 290203 ECH