Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02489 ATGAGGGAGGTTGTTTCGGTTGCAATTTCTGCTACACTTGGGAATCTGTTGTTTGGATGGGATAGTTCAACAATTGCAGGTGGCATGAGATACATCAAAGAAGAATTCCATCTAGAAACTAATCCATCACTTGAGGGACTAATTGTATCCATGTCATTTCTCACCGGAACATTTGCAACAATATTTGCGGGCACAATTTCTGATATGTTCGGAAGGCGTCCGATGTTAATATCATCATCACTCATGTTTTTTTCAAGTGGTTTGGTTATGTTATGGGCTCCTAATATTCCTATGATTCTACTTTCAAGGATATTGAATGGAACTGGAATTGCATTAACTTTGACTTCAGCTCCTCTATATATATCTGAGATAGCACCACCTGATATAAGAGGATTATTGAATACTCTTCCTCAACTTTCTTGCTCTTCTGGAATGTTTTTGGCATATGTTTTGGTTTTCACTTTTTCCTTAATGGATTCATCAAATTGGAGAGGCATGCTTGGTATTGTTTCCATTCCTTCTATTGTTTATTTCTTTCTCGCCGTGTTTTACCTCCCCGAATCTCCTCCTTGGCTTGTAAGTAAAGGTAGAATATCCGAGGCTAAGAAAGTTTTGCAACGAATTCGCTGCGTTGATGATGTTTCAGGAGAATTGGCTTTGCTAGCTGAGGGTATGAATCCTGGAGGTGAATCGACAACTATAGAAGAATACATAGTTGCCCCAGCAAGTGAACTTATTTCAAACAAAGAAGTAGGGAAGGATTGCATAAAACTTTATGGACCAAATCAAGGAGAAGTTTCAATGATTGCACAACAAGTAACGGGTATGATGTCTCGAAGCATGTTAACGATGTCGCGCCAGGGAAGCACGACGTCTCATGCTTCTACTAATCTTAAGGACAATATTGTCAATCTCTTTGGTAGCATGCATGAAAATAGTCCCTTAATTGATCAAAGTGGAGGAGTTTCTAGAGCAAGTCCCTTTGGTACAAGTGACAACCTTCATGCTCCATTACTTCAACATCAAGGTAATGGTATAGAGAAAGACACAGAATTGGTTCAAGGAAATGGTGGAGAAATACCAAAGAACACAGACATTGGTGGAGGGTGGAAATTAGTATATCAATCAATTGAAGCAATTAGTAAAGGTGGAGAAAAGAAAGAAGCACTTCAAAGGGTTTATCTGCATGCAAATCCTAGTGCCTCAGTGTCAAAACAAGCATCATTTGCTTCAACTTCTGGTTATGACTTGCATGCAGATCATGGTGGTGGTGAATCTTTTTCGGCATCTGCACTTGTTAGCCATTCAGTTTGTGCTACTAAGAATACGAAGATTAAACCAGAACATATTCCGAAACGTACAAGTTGGGAAGGTTTGTTAGATCCCGGTGTAAAGAGAGCATTAGTTGTTGGAATAGGACTTCAAGTTCTTCAGCAGGCTTCTGGAATAAATGGAATTATATTCTATGCTCCTGAAATTCTTGACCGGGCCGGAGTTGGAGCACTTTTGTCAAATTTTGGCCTAAGTGCAGCATCTTCTTCTTTACTTGTAAATATGATAACAACATTCTTCATGCTTCCATGTATAGCTATTTCGATGAGGTTGATGGATTTATCAGGAAGAAGGTCAATATTGTTGTACACAATACCAATACTAATACTATCTCTAATGATATTAGTACTGAGAGACTTATTTCATCTAAGTTCAATCATGAATGCAGCAATAACAGCAATATGTGTAGTGACATATGAAAGTGTATTCTGTATGGGTTATGGTGTAATTCCAAACATCATATGTGCAGAAATATTTCCAACAAGTGTTCGTGGAATATGTATGTCTATTTGTTCACTTACATTTTGGATATCAAGCTTGATAATCACTTCTGTGTTTCCTTCCTTGCTTCAACTCCTTGGTCTTACTGGTGTCTTTGTATTGTTTGTTGTTGGTTGCATTGTTTCATTCATTTTTGTTTACTTGAAAGTTCCTGAAACTAAGGGTATGCCTTTAGAAGTTATTATTGAGTTCTTTGCTATTGGTTCAAAGCCACATGAAACTATTGAGTGA 2064 0.3789 MREVVSVAISATLGNLLFGWDSSTIAGGMRYIKEEFHLETNPSLEGLIVSMSFLTGTFATIFAGTISDMFGRRPMLISSSLMFFSSGLVMLWAPNIPMILLSRILNGTGIALTLTSAPLYISEIAPPDIRGLLNTLPQLSCSSGMFLAYVLVFTFSLMDSSNWRGMLGIVSIPSIVYFFLAVFYLPESPPWLVSKGRISEAKKVLQRIRCVDDVSGELALLAEGMNPGGESTTIEEYIVAPASELISNKEVGKDCIKLYGPNQGEVSMIAQQVTGMMSRSMLTMSRQGSTTSHASTNLKDNIVNLFGSMHENSPLIDQSGGVSRASPFGTSDNLHAPLLQHQGNGIEKDTELVQGNGGEIPKNTDIGGGWKLVYQSIEAISKGGEKKEALQRVYLHANPSASVSKQASFASTSGYDLHADHGGGESFSASALVSHSVCATKNTKIKPEHIPKRTSWEGLLDPGVKRALVVGIGLQVLQQASGINGIIFYAPEILDRAGVGALLSNFGLSAASSSLLVNMITTFFMLPCIAISMRLMDLSGRRSILLYTIPILILSLMILVLRDLFHLSSIMNAAITAICVVTYESVFCMGYGVIPNIICAEIFPTSVRGICMSICSLTFWISSLIITSVFPSLLQLLGLTGVFVLFVVGCIVSFIFVYLKVPETKGMPLEVIIEFFAIGSKPHETIE 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02489 687 SUPERFAMILY MFS general substrate transporter 9 670 IPR036259 -
Trre15g02489 687 ProSitePatterns Sugar transport proteins signature 1. 63 80 IPR005829 GO:0016020|GO:0022857|GO:0055085
Trre15g02489 687 Gene3D MFS general substrate transporter like domains 448 684 IPR036259 -
Trre15g02489 687 PRINTS Sugar transporter signature 100 119 IPR003663 GO:0016020|GO:0022857|GO:0055085
Trre15g02489 687 PRINTS Sugar transporter signature 15 25 IPR003663 GO:0016020|GO:0022857|GO:0055085
Trre15g02489 687 PRINTS Sugar transporter signature 600 612 IPR003663 GO:0016020|GO:0022857|GO:0055085
Trre15g02489 687 PRINTS Sugar transporter signature 577 598 IPR003663 GO:0016020|GO:0022857|GO:0055085
Trre15g02489 687 PRINTS Sugar transporter signature 478 488 IPR003663 GO:0016020|GO:0022857|GO:0055085
Trre15g02489 687 ProSiteProfiles Major facilitator superfamily (MFS) profile. 7 665 IPR020846 GO:0022857
Trre15g02489 687 FunFam Monosaccharide-sensing protein 3 2 249 - -
Trre15g02489 687 Gene3D MFS general substrate transporter like domains 2 304 IPR036259 -
Trre15g02489 687 PANTHER PROTON MYO-INOSITOL COTRANSPORTER 4 681 - -
Trre15g02489 687 Pfam Sugar (and other) transporter 7 231 IPR005828 GO:0016020|GO:0022857|GO:0055085
Trre15g02489 687 Pfam Sugar (and other) transporter 449 673 IPR005828 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02489 Trre-Chr15 20781925 20786209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02489 14 684 Organic Solute Cotransporters AT4G35300 48.290 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02489 - - tpra:123881435 1254.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02489 15 20781925 20786209 Trre15g02489 15 20781925 20786209 ECH
Trre15g02489 15 20781925 20786209 Trre9g01440 9 12291870 12295283 ECH
Trre9g01440 9 12291870 12295283 Trre15g02489 15 20781925 20786209 PCT