Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0352 ATGGGCACTGACATAATTGGTATCAAACTGCTCTATGTGCTTTCCTTCTTCTTTTGCGTTAATGGCAGAGGATTAGGACTAGCAAGTTCAGGTGCAAATGGTGTTCAAATGCTAGAAAGAAGCCCTGCAGAACTCAAGGGGGCCAACACTCACCTGTTTAATGTCAGGAGCTTTGGTGCTCAAGCAGATGGTCACACTGATGATAGAAGAGCCTTCACAGCAGCATGGAAGGAGGCCTGCGCCTCAACAGGTAAAGTAAAACTTCTGATACCGAAAGGGACCTATATGATTGGTCCCATTACATTTGCAGGTCCTTGCAACAGCGTATCATCTCTAACTGGTTATTTGAAGGCTACAACAGACTTGTCTGAATATGGATTCAGTGCGGGTTGGATTGAATTTGGATGGATGAAGGGTCTGACCTTGACCGGTGGAGGGACCTTTGATGGCCAAGGTGTTGAGGCCTGGCCATACAATAAGTGCCCCATCAATGCTAACTGCAAACTTCTTCCCACTAATTTGAAGTTTATTGCAATGAACAAGACGGTTGTTCGAGGTATAACTTCAGTGAATAGCAAGTTCTTTCACATAGCTCTCGTAGAATGCAATAATTTCAAAGGTAGCCAAATCAAGATTTCTGCCCCAGAAAACAGTCCCAACACTGATGGCATCCACATTGAGCGAAGCTCTGGCGTTTATTTTTCTCGATCCCTTATTGGTACTGGCGACGACTGCATCTCTGTTGGACAAGGAAATTCTCAAGTCACTATCACAAGCATCACTTCAGTTATATTTGACATTTGTGTTGGAAGCTTGGGAAAATATCCTAATGAAGAAGATGTAAGTGGGCTTGTGGTTAAAGATTGCACCATGACAGGGACTACAAACGGCATCAGGATCAAGACATGGGCTAACTCTCCAGATAGCAGTGAAGCAACCAACATGACATTCGAGAACATCGTCATGAACAATGTGACCAACCCCATTATAATTGATCAAGCATATTGCCCATTCATGTCTTGTGCTTCCAAGGCACCATCTAGAGTGAAGCTGAGTGACATATACTTCAAGAACATAAGAGGGACCTCATTATCTGCAGTGGCGGTGACATTGAAGTGTAGCAGAGGGACCCCATGCCAGAACATTTACCTCCAAGATGTTCACCTAGACCTCTCGTCAGGGGAGAAGCATGCCACTTCCTCTTGTAGAAACGTTAGAGTCAAATACAGTGGCACCCAAATTCCTCCCCCTTGTGCTTAA 1260 0.446 MGTDIIGIKLLYVLSFFFCVNGRGLGLASSGANGVQMLERSPAELKGANTHLFNVRSFGAQADGHTDDRRAFTAAWKEACASTGKVKLLIPKGTYMIGPITFAGPCNSVSSLTGYLKATTDLSEYGFSAGWIEFGWMKGLTLTGGGTFDGQGVEAWPYNKCPINANCKLLPTNLKFIAMNKTVVRGITSVNSKFFHIALVECNNFKGSQIKISAPENSPNTDGIHIERSSGVYFSRSLIGTGDDCISVGQGNSQVTITSITSVIFDICVGSLGKYPNEEDVSGLVVKDCTMTGTTNGIRIKTWANSPDSSEATNMTFENIVMNNVTNPIIIDQAYCPFMSCASKAPSRVKLSDIYFKNIRGTSLSAVAVTLKCSRGTPCQNIYLQDVHLDLSSGEKHATSSCRNVRVKYSGTQIPPPCA* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0352 419 Gene3D - 41 415 IPR012334 -
Vvi3g0352 419 SUPERFAMILY Pectin lyase-like 48 418 IPR011050 -
Vvi3g0352 419 PANTHER - 51 405 - -
Vvi3g0352 419 SMART pbh1 229 250 IPR006626 -
Vvi3g0352 419 SMART pbh1 346 371 IPR006626 -
Vvi3g0352 419 SMART pbh1 281 302 IPR006626 -
Vvi3g0352 419 SMART pbh1 312 333 IPR006626 -
Vvi3g0352 419 Pfam Glycosyl hydrolases family 28 80 410 IPR000743 GO:0004650|GO:0005975
Vvi3g0352 419 FunFam Pectin lyase-like superfamily protein 42 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0352 Vvi-Chr3 2918806 2921293 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0352 41 418 Glycoside Hydrolase AT4G18180 64.662 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0352 K01213 - vvi:100243609 821.617