Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0350 ATGGCTCTTCTTTCCTCATTTTCTAAGGTCTCCATCCTTGCTTTGTCTCTGTCCCTCCTTGCTTTTTCTTCTCTGGCTCGTGATTTTTCCATTGTGGGTTACTCACCGGAGGACTTGACCTGCATAGATAAGCTCATTGCTCGCTTTGAATCATGGGTGTCGAAACATGGCAAAGTTTATAAGAGCATGGAAGAGAAGCTGCATAGGTTTGAGGTGTTCAGAGAAAACTTGAATCACATTGATGAGAGGAACAAGGAGGTGAGTAGCTACTGGCTTGGGTTGAATGAGTTTGCAGACTTGAGCCACGAAGAGTTTAAGAGCAAGTACTTGGGATTGAGAGCTGAGTTCCCCAGAAGTAGGGATTATTCTGGGGAATTCAGGTATAGAGATGTTGCTGATTTGCCGGAGTCTGTGGACTGGAGGAAGAAAGGAGCTGTTACCCATGTCAAGAACCAAGGTGCATGTGGTAGTTGTTGGGCATTTTCAACAGTTGCTGCTGTTGAGGGCATCAACCAGATTGTGACAGGAAATCTAACGACACTGTCAGAGCAAGAGTTGATTGACTGTGACACAACCTTCAACAGTGGCTGCAATGGAGGCTTGATGGATTATGCATTTGCCTTCATAGCTTCTAATGGTGGCCTACACAAGGAGGATGATTACCCATATCTAATGGAGGAAGGCACTTGTGAGGAACAGAAGGAAGATGTGGATATTGTGACAATTAGTGGTTATGAAGATGTGCCAGAGAAGGATGAAGAGAGTCTCTTGAAGGCACTCGCTCACCAGCCACTCAGTGTTGCTATTGAGGCTTCAGGCAGAGATTTCCAGTTTTACAGCGGGGGAGTATTCAATGGGCCTTGTGGAACTGAACTGGATCATGGAGTGGCTGCTGTGGGATATGGATCATCAAAGGGGTTGGATTACATCATTGTGAAGAACTCATGGGGACCAAAATGGGGTGAGAAAGGGTACATAAGGATGAAGAGAAATACAGGAAAAACTGAAGGGCTCTGTGGTATCAACAAAATGGCTTCTTACCCTACCAAAGATAACTGA 1059 0.4533 MALLSSFSKVSILALSLSLLAFSSLARDFSIVGYSPEDLTCIDKLIARFESWVSKHGKVYKSMEEKLHRFEVFRENLNHIDERNKEVSSYWLGLNEFADLSHEEFKSKYLGLRAEFPRSRDYSGEFRYRDVADLPESVDWRKKGAVTHVKNQGACGSCWAFSTVAAVEGINQIVTGNLTTLSEQELIDCDTTFNSGCNGGLMDYAFAFIASNGGLHKEDDYPYLMEEGTCEEQKEDVDIVTISGYEDVPEKDEESLLKALAHQPLSVAIEASGRDFQFYSGGVFNGPCGTELDHGVAAVGYGSSKGLDYIIVKNSWGPKWGEKGYIRMKRNTGKTEGLCGINKMASYPTKDN* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0350 352 SMART Inhibitor_I29_2 49 105 IPR013201 -
Vvi3g0350 352 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 152 163 IPR000169 -
Vvi3g0350 352 Pfam Cathepsin propeptide inhibitor domain (I29) 49 105 IPR013201 -
Vvi3g0350 352 Gene3D Cysteine proteinases 28 351 - -
Vvi3g0350 352 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 292 302 IPR025660 -
Vvi3g0350 352 Pfam Papain family cysteine protease 134 349 IPR000668 GO:0006508|GO:0008234
Vvi3g0350 352 SUPERFAMILY Cysteine proteinases 45 349 IPR038765 -
Vvi3g0350 352 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 309 328 IPR025661 -
Vvi3g0350 352 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 47 347 IPR013128 GO:0008234
Vvi3g0350 352 FunFam cysteine protease XCP2 28 351 - -
Vvi3g0350 352 SMART pept_c1 134 349 IPR000668 GO:0006508|GO:0008234
Vvi3g0350 352 PRINTS Papain cysteine protease (C1) family signature 294 304 IPR000668 GO:0006508|GO:0008234
Vvi3g0350 352 PRINTS Papain cysteine protease (C1) family signature 309 315 IPR000668 GO:0006508|GO:0008234
Vvi3g0350 352 PRINTS Papain cysteine protease (C1) family signature 152 167 IPR000668 GO:0006508|GO:0008234
Vvi3g0350 352 CDD Peptidase_C1A 135 348 IPR039417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0350 Vvi-Chr3 2911408 2912744 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0350 K16290 - vvi:104877917 699.893