Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00371 ATGGCTGTGGTCGAAGCTGCATCTCCCACAACTTTTGATCCTAAAAACAAGCCAAAAAGGAACAAGTTCGCTTTGGCCTGTGCCATTTTGGCTTCAATGACTTCAATCCTATTAGGTTACGATATCGGAGTGATGAGTGGAGCAGCTCTGTACATAAAAAGAGACCTGAAAATTTCGGACGTGCAAGTCGAAATCATGAACGGCATCATAAACCTCTACTCTCCGGTAGGTTCCTTCATCGCCGGCAGAACCTCCGACTGGATAGGCCGCCGTTACACCATTGTCCTCGCCGGAGTCATTTTCTTCGCCGGCGCCATCCTCATGGGACTCTCCCCTAACTACGCCTTCCTCATGTTCGGCCgcttcgtcgccggcgtcggcatcggcttcgccttcCTCATCGCCCCCGTCTACACCTCCGAAATCTCCCCTACCTCCTCTCGCGGCTTCCTCACTTCCCTCCCCGAGGTGTTTTTGAACGGAGGAATTTTAATCGGTTACATTTCGAACTACGGATTTTCTAAATTGCCACTTCGGTTGGGTTGGCGACTCATGCTTGGAGTCGGAGCCGTTCCGTCTATTTTCCTAGCTGTGGCGGTGTTAGCTATGCCGGAGTCGCCACGGTGGCTCGTTGCGAAAGGTCGATTAGGTGAAGCCAAAAGAGTTTTGCACAAAATCTCCGATTCGGAGGAAGAGGCTCGGCTAAGGCTAGCTGATATTAAACAAACATCTGGGATCCCCGACGACTGCGACGACGACGTCGTTTCCGTCACGAAGCGGAGTCACGGCCACAGCGTGTGGAGGGAGCTTTTCCTCCATCCCACGCGCGCGGTTCGTCACATATTCATCGCGTCGCTGGGGATTCATTTTTTCGCGCAAGCGACGGGCATCGACGCCGTCGTTTTGTACAGCCCGAGAATCTTCGAGAAGGCGGGGATAAGATCCGACAACTACCTTCTTTTGGCCACCGTGGCCGTTGGGTTTGCGAAAACCGTTTCCATTTTGGTGGCCACGTTTTTGTTGGACCGGGCCGGGCGGCGCGTGTTGCTTTTGTGCAGCGTTGGCGGGCTGGTGCTCTCGCTGACCACCCTCGGGGTGAGTCTCACTGTGGTGGACCATTCGCGGACCACGCTGACGTGGGCCGTTGGGCTGAGTCTCGCTGCGGTGTTGTCCTACGTGGCCTTTTTCTCGATTGGGTCGGGGCCCATCACGTGGGTTTATAGCTCGGAGATCTTCCCGCTGAGGCTGCGGGCCCAGGGTGTGGCTATTGGAGCCATGGTGAATAGGGTCACTAGTGGGGTCATATCCATGACTTTTCTGTCGCTTTATAAGGCTATCACTATTGGCGGTGCTTTTTTTCTGTTTGCGGGAATCGCTGTTGCTGCCTGGGTCTTTCACTACACGCTGCTCCCCGAGACACGTGGGAAGACTCTTGAGGAAATTGAAGGGTCGTTTGGTAATTTCTGGTGGAAACCCAAGGCTGAGGTAGCTAAAGCTACCGCACAAACGGAACTAAAAACCATTGGCCAAACTTCCACAAACGTGGATTAG 1551 0.5248 MAVVEAASPTTFDPKNKPKRNKFALACAILASMTSILLGYDIGVMSGAALYIKRDLKISDVQVEIMNGIINLYSPVGSFIAGRTSDWIGRRYTIVLAGVIFFAGAILMGLSPNYAFLMFGRFVAGVGIGFAFLIAPVYTSEISPTSSRGFLTSLPEVFLNGGILIGYISNYGFSKLPLRLGWRLMLGVGAVPSIFLAVAVLAMPESPRWLVAKGRLGEAKRVLHKISDSEEEARLRLADIKQTSGIPDDCDDDVVSVTKRSHGHSVWRELFLHPTRAVRHIFIASLGIHFFAQATGIDAVVLYSPRIFEKAGIRSDNYLLLATVAVGFAKTVSILVATFLLDRAGRRVLLLCSVGGLVLSLTTLGVSLTVVDHSRTTLTWAVGLSLAAVLSYVAFFSIGSGPITWVYSSEIFPLRLRAQGVAIGAMVNRVTSGVISMTFLSLYKAITIGGAFFLFAGIAVAAWVFHYTLLPETRGKTLEEIEGSFGNFWWKPKAEVAKATAQTELKTIGQTSTNVD 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00371 516 ProSiteProfiles Major facilitator superfamily (MFS) profile. 27 474 IPR020846 GO:0022857
Cca04g00371 516 ProSitePatterns Sugar transport proteins signature 1. 81 98 IPR005829 GO:0016021|GO:0022857|GO:0055085
Cca04g00371 516 PANTHER POLYOL/MONOSACCHARIDE TRANSPORTER 1 11 499 - -
Cca04g00371 516 ProSitePatterns Sugar transport proteins signature 2. 123 148 IPR005829 GO:0016021|GO:0022857|GO:0055085
Cca04g00371 516 PRINTS Sugar transporter signature 35 45 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca04g00371 516 PRINTS Sugar transporter signature 118 137 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca04g00371 516 PRINTS Sugar transporter signature 292 302 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca04g00371 516 PRINTS Sugar transporter signature 386 407 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca04g00371 516 PRINTS Sugar transporter signature 409 421 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca04g00371 516 Gene3D MFS general substrate transporter like domains 17 487 IPR036259 -
Cca04g00371 516 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 11 499 IPR045262 GO:0015144
Cca04g00371 516 SUPERFAMILY MFS general substrate transporter 14 482 IPR036259 -
Cca04g00371 516 Pfam Sugar (and other) transporter 27 483 IPR005828 GO:0016021|GO:0022857|GO:0055085
Cca04g00371 516 TIGRFAM SP: MFS transporter, sugar porter (SP) family 5 481 IPR003663 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00371 Cca-Chr4 3738631 3740651 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00371 9 506 Organic Solute Cotransporters AT3G18830 67.063 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00371 - - gmx:100816478 839.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00371 04 3738631 3740651 Cca04g00371 04 3738631 3740651 ECH
Cca04g00371 04 3738631 3740651 Cca06g01160 06 25991499 25995476 ECH
Cca04g00371 04 3738631 3740651 Cca11g00962 11 20498873 20504562 ECH