LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu9g1186	ATGAGTGGAGCTATTCTTGTTGCTGTTGCTGCTGCCATCGGTAACTTGCTGCAAGGATGGGATAATGCGACTATTGCTGGATCCATCTTGTACATAAAAAGGGAGTTTCAATTAGAAAGTCAACCCACAGTTGAAGGTCTAATTGTGGCCATGTCACTTATTGGTGCCACCGTTGTAACTACATGCTCCGGAGCCCTTTCAGACTTGCTTGGCCGACGTCCTATGTTGATTATTTCATCTCTCCTTTATTTTGTTAGTTCTCTTGTGATGCTGTGGTCTCCAAATGTTTATATCCTCCTCTTTGCAAGGCTTTTAGATGGTTTGGGAATTGGTTTGGCAGTTACCTTGGTACCTCTTTACATATCCGAGACAGCTCCTCCTGAGATTAGGGGATTACTCAATACACTTCCACAGTTTACTGGTTCCGCAGGAATGTTTTTCTCCTATTGTATGGTGTTTGGGATGTCACTGACCAAGGCGCCAAGCTGGAGACTCATGTTGGGTGTTCTTTCAATCCCTTCTCTTATTTACTTTGCACTCACACTGTTCTTCTTGCCCGAGTCCCCGAGATGGCTTGTTAGTAAAGGCCGAATGCTTGAGGCCAAGAAGGTTTTGCAGCGCCTTCGTGGAAGGGAAGATGTTGCCGGTGAAATGGCTTTACTGGTTGAGGGTCTTGGAGTTGGAGGTGATACATCCATAGAAGAGTATATAATTAGTCCAGCCAATGAACTTGGTGATGAAGAGGATCCATACAGAGAAAAAGATCAGATTAAGTTGTATGGACCGGAACAAGGTCAGTCCTGGGTTGCTAGACCTGCTGCTGGAGCAAGTTCAACTGGCCTTGTATCTCGGAAAGGAAGCATGGCAAATCAAACTGGTCTAGTGGACCCTCTAGTGACCCTCTTTGGTAGTGTTCATGAGAAGCTCCCAGAAACAGGAAGCACTCTTTTTCCACACTTTGGGAGTATGTTTAGTGTTGGGGGAAATCAGCCTAGGAATGAAGATTGGGATGAAGAAAGCATTGCCAGAGAGGGTGATGATTATGTCTCTGATGCTGCTGCCGGTGATTCTGATGACAATTTGCACAGTCCATTGATCTCACGTCAAACAACGAGTCTGGATAAGGACATTCCTCCAACTGCTCATAGCAACCTTTCAAGCACGAGGCAAGGTAGTCTTTTGCATGGAAATGCAGGAGAACCCACTGGTAGTACCAGGATTGGTAGTGGTTGGCAGCTAGCATGGAAATGGACTGAAAGAGAGGACCCAAATGGAAACAAGGAAAGTGGCTTTAAGAGAATATACTTACACCAAGAAGGTGGTCCTGTATCACGTGGTGGTGGTTCTGTGGTTTCACTCCCTGGTGGTGATTTACCGAATGATGGTGAGACTGTACAGGCTGCTGCTTTGGTGAGTAAGCCAGCCCTTTATACCAAGGACGTTATGCGTCAACGACCTGTTGGACCAGCTATGATTCATCCATCTGAAACAACTGCAAAAGGGCCAAACTGGAGTGACCTTTTTGAACCCGGGGTGAAGCATGCCTTGATTGTGGGGGTGGGACTTCAAGTTCTTCAGCAGTTCTCTGGTATAAATGGGGTTCTCTACTACACACCTCAAATTCTTGAGCAGGCAGGTGTTGGTTATCTTCTTTCAAACCTAGGCCTTGGTTCTACTTCTTCATCCTTTCTTATTAGTGCAGTGACAACCTTGTTGATGCTTCCTTGTATAGCCGTTGCCATGAGGCTCATGGATATATCTGGCAGAAGGACTTTGCTACTTACTACAATTCCCGTCCTAATAGCATCTCTTCTCATATTAGTCCTGGGGAGTCTTGTGGATTTGGGCAGCACTGCAAATGCATCAATCTCAACCATTAGTGTCATTGTATATTTCTGTTTCTTTGTCATGGGATTTGGGCCAATTCCTAATATACTTTGTGCAGAGATCTTCCCCACTCGAGTTCGTGGTCTCTGCATTGCCATTTGTGCTCTTACCTTTTGGATCTGTGATATCATTGTCACCTACACACTCCCAGTTATGCTCAATTCTATAGGCCTCGCTGGTGTTTTTGGTATTTATGCTGTGGTGTGCTTCATAGCATGGGTGTTTGTCTTTTTGAAAGTTCCAGAAACCAAGGGCATGCCACTGGAAGTGATCATTGAGTTCTTCTCTGTCGGAGCAAAACAAGTTGACGATGCCAAAGTACAACTGACCTAA	2220	0.4532	MSGAILVAVAAAIGNLLQGWDNATIAGSILYIKREFQLESQPTVEGLIVAMSLIGATVVTTCSGALSDLLGRRPMLIISSLLYFVSSLVMLWSPNVYILLFARLLDGLGIGLAVTLVPLYISETAPPEIRGLLNTLPQFTGSAGMFFSYCMVFGMSLTKAPSWRLMLGVLSIPSLIYFALTLFFLPESPRWLVSKGRMLEAKKVLQRLRGREDVAGEMALLVEGLGVGGDTSIEEYIISPANELGDEEDPYREKDQIKLYGPEQGQSWVARPAAGASSTGLVSRKGSMANQTGLVDPLVTLFGSVHEKLPETGSTLFPHFGSMFSVGGNQPRNEDWDEESIAREGDDYVSDAAAGDSDDNLHSPLISRQTTSLDKDIPPTAHSNLSSTRQGSLLHGNAGEPTGSTRIGSGWQLAWKWTEREDPNGNKESGFKRIYLHQEGGPVSRGGGSVVSLPGGDLPNDGETVQAAALVSKPALYTKDVMRQRPVGPAMIHPSETTAKGPNWSDLFEPGVKHALIVGVGLQVLQQFSGINGVLYYTPQILEQAGVGYLLSNLGLGSTSSSFLISAVTTLLMLPCIAVAMRLMDISGRRTLLLTTIPVLIASLLILVLGSLVDLGSTANASISTISVIVYFCFFVMGFGPIPNILCAEIFPTRVRGLCIAICALTFWICDIIVTYTLPVMLNSIGLAGVFGIYAVVCFIAWVFVFLKVPETKGMPLEVIIEFFSVGAKQVDDAKVQLT*	740

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu9g1186	739	SUPERFAMILY	MFS general substrate transporter	5	718	IPR036259	-
	Pvu9g1186	739	ProSitePatterns	Sugar transport proteins signature 1.	63	80	IPR005829	GO:0016021\|GO:0022857\|GO:0055085
	Pvu9g1186	739	CDD	MFS_GLUT_like	514	711	-	-
	Pvu9g1186	739	MobiDBLite	consensus disorder prediction	369	407	-	-
	Pvu9g1186	739	PANTHER	-	1	730	-	-
	Pvu9g1186	739	Gene3D	MFS general substrate transporter like domains	2	248	IPR036259	-
	Pvu9g1186	739	PANTHER	TONOPLAST MONOSACCHARIDE TRANSPORTER 2	1	730	-	-
	Pvu9g1186	739	Gene3D	MFS general substrate transporter like domains	496	735	IPR036259	-
	Pvu9g1186	739	ProSiteProfiles	Major facilitator superfamily (MFS) profile.	7	713	IPR020846	GO:0022857
	Pvu9g1186	739	ProSitePatterns	Sugar transport proteins signature 2.	105	130	IPR005829	GO:0016021\|GO:0022857\|GO:0055085
	Pvu9g1186	739	PRINTS	Sugar transporter signature	15	25	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Pvu9g1186	739	PRINTS	Sugar transporter signature	100	119	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Pvu9g1186	739	PRINTS	Sugar transporter signature	526	536	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Pvu9g1186	739	PRINTS	Sugar transporter signature	625	646	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Pvu9g1186	739	PRINTS	Sugar transporter signature	648	660	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Pvu9g1186	739	Pfam	Sugar (and other) transporter	7	222	IPR005828	GO:0016021\|GO:0022857\|GO:0055085
	Pvu9g1186	739	Pfam	Sugar (and other) transporter	501	721	IPR005828	GO:0016021\|GO:0022857\|GO:0055085
	Pvu9g1186	739	CDD	MFS_GLUT_like	14	193	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu9g1186	Pvu-Chr9	17298710	17304455	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu9g1186	1	735	Organic Solute Cotransporters	AT4G35300	73.378	0.0	1043

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu9g1186	-		-	gmx:100793265	1280

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu9g1186	9	17298710	17304455	Pvu9g1186	9	17298710	17304455	ECH
	Pvu9g1186	9	17298710	17304455	Pvu2g1220	2	23927092	23931421	ECH