Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g06000 ATGAGTGGAGCTGTTATTGTTGCTGTTGCCGCTGCTATTGGAAATTTATTGCAAGGATGGGACAATGCAACTATTGCAGGGTCTATTTTATACATAAAGAGAGAATTTCAATTAGAAAGTGAACCCACAGTTGAAGGTCTAATTGTAGCTATGTCACTTATTGGAGCCACCGTGGTTACTACATGCTCTGGAGCCCTATCAGACTTGTTTGGACGACGCCCTATGTTGATTATCTCTTCCCTCCTATATTTTGTTAGTTCTCTTGTCATGTTTTGGTCACCAAATGTTTATATACTGCTCTTTGCAAGACTTTTAGATGGGTTGGGAATTGGTTTGGCAGTTACCTTGGTACCTCTTTATATATCTGAGATAGCTCCTCCTGAGATTAGAGGATCACTCAATACACTTCCACAGTTCACTGGTTCTGCTGGTATGTTTTTATCTTATTGTATGGTGTTTGGGATGTCACTAACCAAGACACCAAGTTGGAGACTCATGTTGGGTGTTCTTTCAATCCCATCTCTAATTTATTTTGCACTAACATTATTGTTATTGCCGGAGTCTCCAAGATGGCTTGTTAGTAAAGGTCGAATGCTTGAGGCTAAAAAAGTTTTGCAAGGCCTTCGTGGATGTGAAGATGTTGCTGGTGAGATGGCTTTACTGGTTGAGGGTCTTGGAGTCGGGGGTGATACATCCATAGAAGAGTACATGATAGGTCCAGCTAATGAATTAGCTGAAGAAGAGGATCCATCTACAAGTAAAGATCATATAAAATTGTACGGGCCTGAACATGGCCAATCTTGGGTTGCCAGACCTGTCACCGGACAAAGTTCTGTAGGCCTTATATCTAGGAAGGGAAGCATGGCAAATCCGAGTGGTCTAGTGGACCCTTTGGTGACCCTATTTGGTAGTGTTCATGAGAAGCTCCCAGAAACAAGAATGGGAAGCGCTCTTTTTCCACACTTTGGAAGCATGTTTAGTATTGGTGGAAATCAACCAAAAAATGAAGATTGGGATGAAGAAAGCCTTGCTAGAGAAGGTGATGACTATATCTCTGATGCTGCTGCCGGTGATTCTGATGACAATTTGCAGAGTCCATTAATTTCACGTCAAACAACTAGTATGGATAAGGACATGCCTCCTCCTTCACAAGGCAGCCTTTCAAACATAAGGCAAAGTAGTATTTTACAAGGGAATGCAGGAGAACCTGTTGGGAGTGCTGGAATTGGTGGTGGTTGGCAATTAGCATGGAAATGGTCTGAACAAGAGGGCCCAGATGGAAAGAAGGAAGGTGGTTTCAAGAGAATATATTTACACCAAGAAGGTGGTTCTGGATCTAGACGCGGATCTGTTGTTTCACTTGTTGGCAGTGATATCCCAATAAATGGTGAGGCTGTACAAGCAGCTGCTCTTGTGAGTCAACCAGCTCTTTATAACAACAAAGAGCTCATGCATCAACATCCAGTTGGACCTGTTATGGTTCATCCATCTGAAACAGCTGCAAAAGGGCCAAGTTGGAATGATCTTTTTGAGCCGGGGGTGAAGCATGCATTGTTTGTAGGGGTGGGACTTCAAATTCTTCAGCAGTTCTCTGGTATAAACGGAGTTCTCTACTATACACCACAAATTCTAGAACAAGCAGGTGTTGGTTTTCTTCTTTCAAACCTGGGACTTAGTTCTACTTCATCATCTTTTCTAATTAGTGCAGTGACAACCTTGTTGATGCTTCCTAGTATAGCTATTGCCATGAGGCTCATGGATATTTCTGGTAGAAGGACTTTACTGCTCACTACAATCCCTATATTGATAGTATCTCTTCTCATATTAGTCCTAGGGAGTCTTGTGGATTTGGGCAGCACTGCAAATGCATCAATCTCAACCATTACCGTTGTTGTCTATTTTTGTTTCTTTGTCATGGGATTTGGTCCAATTCCCAATATACTTTGTGCTGAGATCTTCCCAACTCGAGTTCGTGGTCTTTGCATTGCCATATGTGCTCTTACCTTTTGGATATGTGACATCATTGTCACATATTCACTCCCTGTTATGTTGAATTCTATGGGTCTTGGTGGTGTTTTTGGTTTGTATGCAATTGTGTGCTTCATAGCTTGGGTGTTTGTCTTCTTGAAAGTTCCAGAAACCAAAGGCATGCCACTTGAAGTGATCATTGAGTTCTTCTCCGTTGGAGCAAAACAGGCTGACGCCGTCAAAAACAATTAA 2220 0.4207 MSGAVIVAVAAAIGNLLQGWDNATIAGSILYIKREFQLESEPTVEGLIVAMSLIGATVVTTCSGALSDLFGRRPMLIISSLLYFVSSLVMFWSPNVYILLFARLLDGLGIGLAVTLVPLYISEIAPPEIRGSLNTLPQFTGSAGMFLSYCMVFGMSLTKTPSWRLMLGVLSIPSLIYFALTLLLLPESPRWLVSKGRMLEAKKVLQGLRGCEDVAGEMALLVEGLGVGGDTSIEEYMIGPANELAEEEDPSTSKDHIKLYGPEHGQSWVARPVTGQSSVGLISRKGSMANPSGLVDPLVTLFGSVHEKLPETRMGSALFPHFGSMFSIGGNQPKNEDWDEESLAREGDDYISDAAAGDSDDNLQSPLISRQTTSMDKDMPPPSQGSLSNIRQSSILQGNAGEPVGSAGIGGGWQLAWKWSEQEGPDGKKEGGFKRIYLHQEGGSGSRRGSVVSLVGSDIPINGEAVQAAALVSQPALYNNKELMHQHPVGPVMVHPSETAAKGPSWNDLFEPGVKHALFVGVGLQILQQFSGINGVLYYTPQILEQAGVGFLLSNLGLSSTSSSFLISAVTTLLMLPSIAIAMRLMDISGRRTLLLTTIPILIVSLLILVLGSLVDLGSTANASISTITVVVYFCFFVMGFGPIPNILCAEIFPTRVRGLCIAICALTFWICDIIVTYSLPVMLNSMGLGGVFGLYAIVCFIAWVFVFLKVPETKGMPLEVIIEFFSVGAKQADAVKNN 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g06000 739 ProSitePatterns Sugar transport proteins signature 1. 63 80 IPR005829 GO:0016020|GO:0022857|GO:0055085
Trre5g06000 739 ProSitePatterns Sugar transport proteins signature 2. 105 130 IPR005829 GO:0016020|GO:0022857|GO:0055085
Trre5g06000 739 SUPERFAMILY MFS general substrate transporter 9 720 IPR036259 -
Trre5g06000 739 PANTHER PROTON MYO-INOSITOL COTRANSPORTER 5 732 - -
Trre5g06000 739 Pfam Sugar (and other) transporter 502 723 IPR005828 GO:0016020|GO:0022857|GO:0055085
Trre5g06000 739 Pfam Sugar (and other) transporter 7 222 IPR005828 GO:0016020|GO:0022857|GO:0055085
Trre5g06000 739 ProSiteProfiles Major facilitator superfamily (MFS) profile. 7 715 IPR020846 GO:0022857
Trre5g06000 739 FunFam monosaccharide-sensing protein 2 2 249 - -
Trre5g06000 739 Gene3D MFS general substrate transporter like domains 499 737 IPR036259 -
Trre5g06000 739 Gene3D MFS general substrate transporter like domains 3 260 IPR036259 -
Trre5g06000 739 PRINTS Sugar transporter signature 15 25 IPR003663 GO:0016020|GO:0022857|GO:0055085
Trre5g06000 739 PRINTS Sugar transporter signature 528 538 IPR003663 GO:0016020|GO:0022857|GO:0055085
Trre5g06000 739 PRINTS Sugar transporter signature 627 648 IPR003663 GO:0016020|GO:0022857|GO:0055085
Trre5g06000 739 PRINTS Sugar transporter signature 650 662 IPR003663 GO:0016020|GO:0022857|GO:0055085
Trre5g06000 739 PRINTS Sugar transporter signature 100 119 IPR003663 GO:0016020|GO:0022857|GO:0055085
Trre5g06000 739 FunFam Monosaccharide-sensing protein 2 479 728 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g06000 Trre-Chr5 59241650 59246392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g06000 1 739 Organic Solute Cotransporters AT4G35300 72.237 0.0 1016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g06000 - - mtr:11418231 1273.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g06000 5 59241650 59246392 Trre5g06000 5 59241650 59246392 ECH
Trre5g06000 5 59241650 59246392 Trre9g01440 9 12291870 12295283 ECH