LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops3g00513	ATGGATCATCGTAATCTCATTCTCTTCTTCGCTGTCTTCTCCTTCTTCTTCTTCGTCTCGGAGATCTCGTCGGAGACGGTGGAGGACGGTGCAAACCCGTTGATCCGGCAGGTGGTTGACGGCGTGCGGTTGGGAGCAGAGCATCACTTTCATGAGTTCAAGCGCAGGTTTGGGAAGGCGTATTCATCTGAGGAGGAGCACGATTACAGGTTCAAGGTATTTAAGGCTAACTTGCGCCGTGCACAGCGTCACCAGAGCTTGGACCCTTCGGCGGTTCACGGTGTGACTCGGTTCTCCGATCTGACGCCGGAGGAGTTCAGGAAGAATGTTTTGGGGCTGAGAGGAGGGTTGAGGTTGCCTTCTGATGCAAATAAGGCTCCTATTCTTCCAACTGATAATCTTCCTGGCGATTTTGATTGGAGAGATCATGGAGCTGTTACACCTGTCAAGAATCAGGGTTCGTGTGGATCGTGTTGGAGCTTCAGCACAACTGGGGCTCTTGAAGGTGCTCACTTTCTCTCTACTGGGGAACTTGTTAGTCTTAGCGAGCAGCAGCTTGTCGATTGTGATCACGAGTGTGATCCAGATGAACCAGGTTCATGCGACTCAGGGTGCAACGGTGGATTGATGAATAGTGCGTTTGAGTACATCCTTAAATCTGGTGGGGTCATGCGAGAGGAAGACTATCCTTATTCTGGTACTGATCGTGGGACCTGCAAGTTTGACAAGACAAAGATTGCAGCATCGGTGGCAAACTTCAGTGTCGTCTCACTTGATGAAGACCAGATTGCTGCCAATCTTGTGAAAAATGGCCCTCTCGCAGTGGCCATCAATGCAGTATTTATGCAGACATATATCGGTGGAGTATCGTGCCCATACATATGTTCCAGGAGACAGAATCATGGAGTCTTACTGGTTGGATACGGTTCTGGTGAATATGCACCCATTCGGATGAAGGAGAAGCCATATTGGATCATTAAAAATTCCTGGGGAGAGAGCTGGGGAGAAAATGGACACTACAAGATTTGCAGGGGACGAAATATCTGTGGGGTGGACTCCATGGTTTCAACTGTGGCCGCTGTTCATACCACTACTACTCAGTAG	1104	0.4937	MDHRNLILFFAVFSFFFFVSEISSETVEDGANPLIRQVVDGVRLGAEHHFHEFKRRFGKAYSSEEEHDYRFKVFKANLRRAQRHQSLDPSAVHGVTRFSDLTPEEFRKNVLGLRGGLRLPSDANKAPILPTDNLPGDFDWRDHGAVTPVKNQGSCGSCWSFSTTGALEGAHFLSTGELVSLSEQQLVDCDHECDPDEPGSCDSGCNGGLMNSAFEYILKSGGVMREEDYPYSGTDRGTCKFDKTKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVFMQTYIGGVSCPYICSRRQNHGVLLVGYGSGEYAPIRMKEKPYWIIKNSWGESWGENGHYKICRGRNICGVDSMVSTVAAVHTTTTQ*	368

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops3g00513	367	SMART	Inhibitor_I29_2	50	106	IPR013201	-
	Rops3g00513	367	Pfam	Papain family cysteine protease	134	357	IPR000668	GO:0006508\|GO:0008234
	Rops3g00513	367	PANTHER	CYSTEINE PROTEASE FAMILY C1-RELATED	47	352	IPR013128	GO:0008234
	Rops3g00513	367	FunFam	Cysteine protease RD19A	33	359	-	-
	Rops3g00513	367	SUPERFAMILY	Cysteine proteinases	48	358	IPR038765	-
	Rops3g00513	367	CDD	Peptidase_C1A	135	356	IPR039417	-
	Rops3g00513	367	PRINTS	Papain cysteine protease (C1) family signature	152	167	IPR000668	GO:0006508\|GO:0008234
	Rops3g00513	367	PRINTS	Papain cysteine protease (C1) family signature	301	311	IPR000668	GO:0006508\|GO:0008234
	Rops3g00513	367	PRINTS	Papain cysteine protease (C1) family signature	323	329	IPR000668	GO:0006508\|GO:0008234
	Rops3g00513	367	ProSitePatterns	Eukaryotic thiol (cysteine) proteases cysteine active site.	152	163	IPR000169	-
	Rops3g00513	367	SMART	pept_c1	134	359	IPR000668	GO:0006508\|GO:0008234
	Rops3g00513	367	Pfam	Cathepsin propeptide inhibitor domain (I29)	50	106	IPR013201	-
	Rops3g00513	367	Gene3D	Cysteine proteinases	29	359	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops3g00513	Rops-Chr3	6528153	6529992	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops3g00513	K01373		-	gmx:100812198	625.55

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops3g00513	3	6528153	6529992	Rops3g00513	3	6528153	6529992	ECH
	Rops10g01116	10	23171011	23173887	Rops3g00513	3	6528153	6529992	ECH