Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03774 ATGAGTGGGGCTGTTCTTGTTGCTGTTGCTGCTGCCATCGGTAACTTACTGCAAGGATGGGATAATGCGACAATTGCAGGATCTATCTTGTATATAAAAAGGGAATTTCTATTAGAAAGTCAACCCACAGTTGAAGGTCTAATTGTGGCCATGTCACTTATTGGTGCCACCGTGGTTACTACATGCTCTGGAGCCCTTTCAGACTTGTTAGGCCGCCGTCCCATGTTGATTATTTCCTCTCTCCTTTATTTTGTTAGTTCTCTTGTGATGTTATGGTCTCCAAATGTTTATATCCTCCTCTTTGCAAGGCTTTTAGATGGTTTGGGCATTGGTTTGGCAGTTACCTTGGTACCTCTTTACATATCCGAGACAGCTCCTCCTGAGATTAGGGGATTACTCAATACACTTCCACAGTTTACTGGTTCAGCGGGAATGTTTTTATCGTATTGTATGGTGTTTGGGATGTCACTGACCAAGGCGCCAAGCTGGAGACTCATGTTGGGAGTTCTTTCAATCCCTTCTGTTGTTTACTTCGCACTCACACTGTTCTTCTTGCCCGAGTCTCCGAGATGGCTTGTTAGTAAAGGCCGAATGCTTGAGGCCAAGAAGGTTTTGCAGCGCCTTCGTGGAAGGGAAGATGTTTCCGGTGAAATGGCTTTACTGGTTGAGGGGCTTGGAGTTGGAGGTGATACAGCCATAGAAGAGTATATAATTGCGCCAGTCAATGAACTTGGTGATGAAGAGGACCCATACAGAGAAAAAGATCAGATTAAGTTGTATGGACCGGAACAAGGTCAGTCCTGGGTTGCTAGACCTGCACCTGGACAAAGTTCAATCGGCCTTATATCTCGGAAGGGAAGCGTGGCAAATCAAAGTGGTCTAGTGGACCCTCTAGTGACCCTCTTTGGTAGTGTTCATGAGAAGCACACGGAAACAGGAAGCATGCGAAGCACTCTTTTTCCACACTTTGGGAGTATGTTTAGTGTTGGGGGAAATCAACCTAGGAATGAAGATTGGGATGAAGAAAGCCTTGCTAGAGAGGGAGATGATTATGTCTCTGATGCTGCTGTGGGTGATTCTGATGACAATTTGCAGAGTCCATTGATCTCACGTCAAACAACGAGTCTGGATAAGGACATACCTCCAACTGCTCATAGCAACCTTTCAAGCACGAGGCAAGGTAGTCTTTTGCATGGAAATGCAGGAGAACCCACTGGTAGTACCAGGATTGGTAGTGGTTGGCAGCTAGCATGGAAATGGACTGAAAGAGAGGACCCAAATGGAAACAAGGAGGGTGGTTTCAAGAGAATATATCTACACCAAGAAGGTGGTCCTGGATTACGTGGTTCTGTGGTTTCTCTCCCTGGTGGTGATATACCGAATGATGGTGAGACTGTACAGGCTGCTGCTTTGGTGAGTCAGCCAGCCCTTTATAACAAGGACGTTATGCGTCAGCAACCAGTTGGACCAGCTATGATTCATCCATCTGAAACAACTGCAAAAGGGCCAAACTGGAGTGACCTTTCTGAACCTGGAGTGAAGCATGCCTTGTTTGTGGGGGTGGGACTTCAAATTCTTCAGCAGTTCTCTGGTATAAATGGGGTTCTCTACTATACACCACAAATTCTTGAGCAGGCAGGTGTTGGTTATCTTCTTTCAAACCTAGGCCTTGGTTCTACTTCTTCATCCTTTCTTATTAGTGCAGTGACAACCTTGTTGATGCTTCCTTGTATAGCCGTTGCCATGAGACTCATGGATATATCTGGCAGAAGGACTTTGCTGCTTAGTACAATTCCCGTCCTAATAGCATCTCTTATCATATTAGTCCTGGGGAGTTTTGTGGATTTGGGCAGCACTGCAAATGCATCAATCTCAACCATTAGTGTTATTGTATATTTCTGTTTCTTTGTCATGGGATTTGGGCCAATTCCTAATATACTTTGTGCAGAGATCTTCCCCACTCGAGTTCGTGGTCTCTGCATTGCCATTTGTGCTCTTACCTTTTGGATCTGTGATATCATTGTCACCTACACACTCCCAGTTATGCTCAATTCCGTAGGCCTCTCTGGTGTATTTGGTATTTATGCTTTCGTGTGCTTCATAGCATGGGTATTTGTCTTTTTGAAAGTTCCAGAAACCAAGGGCATGCCACTGGAAGTCATCATTGAGTTCTTCTCTGTCGGAGCAAAACAAGTTGAGGATGCCAAAGTACAACTGACCTAA 2223 0.4507 MSGAVLVAVAAAIGNLLQGWDNATIAGSILYIKREFLLESQPTVEGLIVAMSLIGATVVTTCSGALSDLLGRRPMLIISSLLYFVSSLVMLWSPNVYILLFARLLDGLGIGLAVTLVPLYISETAPPEIRGLLNTLPQFTGSAGMFLSYCMVFGMSLTKAPSWRLMLGVLSIPSVVYFALTLFFLPESPRWLVSKGRMLEAKKVLQRLRGREDVSGEMALLVEGLGVGGDTAIEEYIIAPVNELGDEEDPYREKDQIKLYGPEQGQSWVARPAPGQSSIGLISRKGSVANQSGLVDPLVTLFGSVHEKHTETGSMRSTLFPHFGSMFSVGGNQPRNEDWDEESLAREGDDYVSDAAVGDSDDNLQSPLISRQTTSLDKDIPPTAHSNLSSTRQGSLLHGNAGEPTGSTRIGSGWQLAWKWTEREDPNGNKEGGFKRIYLHQEGGPGLRGSVVSLPGGDIPNDGETVQAAALVSQPALYNKDVMRQQPVGPAMIHPSETTAKGPNWSDLSEPGVKHALFVGVGLQILQQFSGINGVLYYTPQILEQAGVGYLLSNLGLGSTSSSFLISAVTTLLMLPCIAVAMRLMDISGRRTLLLSTIPVLIASLIILVLGSFVDLGSTANASISTISVIVYFCFFVMGFGPIPNILCAEIFPTRVRGLCIAICALTFWICDIIVTYTLPVMLNSVGLSGVFGIYAFVCFIAWVFVFLKVPETKGMPLEVIIEFFSVGAKQVEDAKVQLT 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03774 740 Gene3D MFS general substrate transporter like domains 498 737 IPR036259 -
Vimu10g03774 740 MobiDBLite consensus disorder prediction 359 410 - -
Vimu10g03774 740 FunFam Monosaccharide-sensing protein 2 478 727 - -
Vimu10g03774 740 Pfam Sugar (and other) transporter 505 722 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vimu10g03774 740 Pfam Sugar (and other) transporter 7 221 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vimu10g03774 740 Gene3D MFS general substrate transporter like domains 2 247 IPR036259 -
Vimu10g03774 740 PANTHER PROTON MYO-INOSITOL COTRANSPORTER 5 731 - -
Vimu10g03774 740 ProSitePatterns Sugar transport proteins signature 1. 63 80 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vimu10g03774 740 MobiDBLite consensus disorder prediction 354 410 - -
Vimu10g03774 740 ProSiteProfiles Major facilitator superfamily (MFS) profile. 7 714 IPR020846 GO:0022857
Vimu10g03774 740 SUPERFAMILY MFS general substrate transporter 6 719 IPR036259 -
Vimu10g03774 740 ProSitePatterns Sugar transport proteins signature 2. 105 130 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vimu10g03774 740 PRINTS Sugar transporter signature 15 25 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu10g03774 740 PRINTS Sugar transporter signature 100 119 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu10g03774 740 PRINTS Sugar transporter signature 527 537 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu10g03774 740 PRINTS Sugar transporter signature 649 661 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu10g03774 740 PRINTS Sugar transporter signature 626 647 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu10g03774 740 FunFam monosaccharide-sensing protein 2 2 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03774 Vimu-Chr10 46435061 46439714 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03774 1 736 Organic Solute Cotransporters AT4G35300 73.613 0.0 1044
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03774 - - gmx:100790278 1297.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03774 10 46435061 46439714 Vimu10g03774 10 46435061 46439714 ECH
Vimu10g03774 10 46435061 46439714 Vimu7g03206 7 27129323 27132884 ECH