Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00811 ATGGCTGAGGCCGAAGTAGCAGCAGCTCCAACTCACAATGAATTTGAGCCTCATCAAAAGAAGCCATCAAGGAACAAATATGCCTTAGCTTGTGCTATGCTTGCTTCCATGACTTCCATCCTCCTTGGTTACGATATTGGTGTGATGAGTGGAGCAGCTATGTACATAAAGCGAGATCTGAGAATTTCGGATGTGAAGATTGAAATCCTTGCCGGTATAATAAACTTGTACTCTCCAATAGGTTCATACATAGCTGGAAGAACCTCTGATTGGATTGGTCGCCGTTACACTATTATATTGGCCGCCGTAATTTTCTTCGTCGGAGCAATTCTGATGGGATTTTCACCAAACTATGCTTTCCTCATGTTCGGCCGGTTTGTCGCCGGCATAGGAATCGGTTTTGCTTTCCTCATTGCACCCGTTTACACCTCAGAAATCTCTCCTACTTCTTCCCGTGGTTTCCTCTCTTCCTTGCCTGAGGTGTTTTTGAACGGAGGAATATTGCTGGGATACATCTCAAACTATGCATTTTCAAAGCTTTCACTTCGAATGGGTTGGCGGTTGATGCTAGGAGTAGGAGCGATTCCTTCAATGTTCCTAGCCGTGGCGGTTTTAGCCATGCCGGAATCACCAAGGTGGCTCGTTTCTCAAGGACGAATAGGCGAAGCCAGAAAGATCCTCAACAAAATCTCCGACTTCCGACTNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTGTATGGAAGGAGCTTCTCCTTTATCCTACACCCGCGGTGCGCCACATCTTCATCGCTTCCTTAGGGATTCACTTCTTTGCGCAAGCTACCGGCATAGACGCCGTCGTTTTGTACAGCCCTAGAATCTTTGAGAAGGCTGGGATCAAATCTGATAATAAAAAGCTTCTCGCAACCGTAGCCGTTGGATTCGTCAAAACGATTTTCATCTTAGTGGCCACTTTTTTCCTGGATCGTGTTGGAAGACGCAAGTTGCTGTTAAGCAGCGTTAGCGGTTTGATAATCTCGCTTCTAACCCTTGCGGTGAGTCTCACCGTAGTGAATCGTTCGAAGACGACGCTGAACTGGGCCATTGGGCTTAGCATAGCCTCGGTTTTGTCCTATGTGGGCTCGTTCTCGATTGGGTCTGGGCCCATTACGTGGGTTTATAGTTCGGAGATATTTCCGTTGAGGCTGCGCGCTCAGGGTGTAGCTATTGGAGCTGTGGTGAATAGGGTCACCAGTGGAGTGATCTCAATGACCTTTTTGTCCCTCACGAAGGCAATTACCACTGGTGGGGCTTTCTTTCTCTTTGCTGGAATTGCAGCTGCTGCGTGGGTATTTCACTATACTCTGCTCCCTGAAACGCGCGGTAAAACTCTTGAAGAAATTGAAGGATCTTTCGGTAATTTCTGCAGAAAATCTAAGAATAGTGCTAACGGGGAGGGACTTAGCCGTAATAGCACTGGTAACGGCCAGATCCAATTGGGGACCAACGGCCAGAACCAGCCTTTGACAAGTGTGGATTAA 1521 0.4668 MAEAEVAAAPTHNEFEPHQKKPSRNKYALACAMLASMTSILLGYDIGVMSGAAMYIKRDLRISDVKIEILAGIINLYSPIGSYIAGRTSDWIGRRYTIILAAVIFFVGAILMGFSPNYAFLMFGRFVAGIGIGFAFLIAPVYTSEISPTSSRGFLSSLPEVFLNGGILLGYISNYAFSKLSLRMGWRLMLGVGAIPSMFLAVAVLAMPESPRWLVSQGRIGEARKILNKISDFRXXXXXXXXXXGVWKELLLYPTPAVRHIFIASLGIHFFAQATGIDAVVLYSPRIFEKAGIKSDNKKLLATVAVGFVKTIFILVATFFLDRVGRRKLLLSSVSGLIISLLTLAVSLTVVNRSKTTLNWAIGLSIASVLSYVGSFSIGSGPITWVYSSEIFPLRLRAQGVAIGAVVNRVTSGVISMTFLSLTKAITTGGAFFLFAGIAAAAWVFHYTLLPETRGKTLEEIEGSFGNFCRKSKNSANGEGLSRNSTGNGQIQLGTNGQNQPLTSVD 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00811 506 PRINTS Sugar transporter signature 122 141 IPR003663 GO:0016020|GO:0022857|GO:0055085
Aip03g00811 506 PRINTS Sugar transporter signature 366 387 IPR003663 GO:0016020|GO:0022857|GO:0055085
Aip03g00811 506 PRINTS Sugar transporter signature 272 282 IPR003663 GO:0016020|GO:0022857|GO:0055085
Aip03g00811 506 PRINTS Sugar transporter signature 389 401 IPR003663 GO:0016020|GO:0022857|GO:0055085
Aip03g00811 506 PRINTS Sugar transporter signature 39 49 IPR003663 GO:0016020|GO:0022857|GO:0055085
Aip03g00811 506 ProSiteProfiles Major facilitator superfamily (MFS) profile. 31 454 IPR020846 GO:0022857
Aip03g00811 506 ProSitePatterns Sugar transport proteins signature 1. 85 102 IPR005829 GO:0016021|GO:0022857|GO:0055085
Aip03g00811 506 SUPERFAMILY MFS general substrate transporter 12 462 IPR036259 -
Aip03g00811 506 Gene3D MFS general substrate transporter like domains 248 477 IPR036259 -
Aip03g00811 506 MobiDBLite consensus disorder prediction 476 506 - -
Aip03g00811 506 CDD MFS_PLT 34 461 IPR044776 GO:0005351
Aip03g00811 506 PANTHER POLYOL/MONOSACCHARIDE TRANSPORTER 1 15 234 - -
Aip03g00811 506 PANTHER POLYOL/MONOSACCHARIDE TRANSPORTER 1 241 483 - -
Aip03g00811 506 ProSitePatterns Sugar transport proteins signature 2. 127 152 IPR005829 GO:0016021|GO:0022857|GO:0055085
Aip03g00811 506 Gene3D MFS general substrate transporter like domains 21 233 IPR036259 -
Aip03g00811 506 Pfam Sugar (and other) transporter 32 463 IPR005828 GO:0016021|GO:0022857|GO:0055085
Aip03g00811 506 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 15 234 IPR045262 GO:0015144
Aip03g00811 506 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 241 483 IPR045262 GO:0015144
Aip03g00811 506 TIGRFAM SP: MFS transporter, sugar porter (SP) family 19 461 IPR003663 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00811 Aip-Chr3 7851814 7854587 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00811 3 498 Organic Solute Cotransporters AT3G18830 59.886 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00811 - - adu:107476619 868.226
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00811 03 7851814 7854587 Aip03g00811 03 7851814 7854587 ECH
Aip03g00811 03 7851814 7854587 Aip05g00262 05 2837326 2840755 ECH