Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g0330 . . . . . . Aed1g0650 Aed5g1115 . . Ahy18g1255 Ahy13g1812 Aip08g01337 Aip03g02007 . . Amo18g1452 . Apr2g0356 Apr5g0085 . . . . . . Bva09g00820 Bva07g01792 Car01g02086 . Cca10g01058 Cca04g01386 . . . . . . . . Gma06g02286 Gma12g01366 . Gma13g02487 Gso6g2080 Gso6g2080 . Gso6g2080 . . . Lal20g0308 Lal1g0560 Lal11g1398 . . . . . . . . . . . . . . . . . . . Lja3g4495 Mal4g1039 . . . . . . . Mtr2g2686 . . . . . . . Psa5g5659 . . . . . . . . . . . . . . . . . Ssu8g1102 Ssu3g1849 . Sto4g2900 Tpr7g3592 . . . Tsu02g04465 . . . . . . . . . . . . Vra2g1324
Vvi19g0331 . . . . . . Aed1g0653 Aed5g1114 . . . Ahy13g1810 . Aip03g02005 . . . . Apr2g0355 Apr5g0084 . . . . . . . Bva07g01793 . . Cca10g01057 Cca04g01385 . . . . . . . . Gma06g02287 Gma12g01365 Gma12g02071 Gma13g02488 Gso6g2082 Gso6g2082 Gso6g2082 Gso6g2082 Lal9g0500 . Lal2g0564 Lal20g0307 . . Lan8g1404 . Lan8g1404 Lan8g1404 . . . . . . . . . . . . . . . Lja3g4494 Mal4g1038 Mal5g2378 . . . . . . Mtr2g2687 Mtr8g1689 . . . . . . Psa5g5660 . . . . . . . . . . . . . . . . . Ssu8g1100 Ssu3g1850 . Sto4g2901 Tpr7g2110 . . . . Tsu08g02061 . . . . . . . . . . . Vra2g1323
Vvi19g0332 . . . . . . . . . . . Ahy13g1808 . Aip03g02001 . . . . . Apr5g0081 . . . . . . . Bva07g01796 Car01g02087 Car07g02159 . Cca04g01383 . . . . . . . . Gma06g02294 . Gma12g02070 Gma13g02489 . . . . . . Lal2g0561 . . . . . . . . . . . . . . . . . . . . . . Lja3g4493 . . . . . . . . Mtr2g2688 . . . . . . . Psa5g5661 . . . . . . . . . . . . . . . . . . . Sto7g0306 . Tpr7g3593 . . . Tsu02g04466 . . . . . . . . . . . . Vra2g1318
Vvi19g0333 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0334 . . . . . . . Aed5g1110 . . . . . . . . . . . Apr5g0080 . . . . . . . Bva07g01797 . Car07g02157 . Cca04g01380 . . . . . . . . Gma06g02296 . . . Gso6g2084 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu3g1857 . Sto4g2904 . . . . . . . . . . . . . . . . . Vra2g1313
Vvi19g0335 . . . . . . . Aed5g1108 . . . . . . . . . . . Apr5g0078 . . . . . . . . . . . Cca04g01378 . . . . . . . . . Gma12g01360 . . . . . . Lal9g0496 . . . . . Lan8g1409 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu3g1860 . . . . . . . . . . . . . . . . . . . Vra2g1312
Vvi19g0336 . . . . . . . . . . . Ahy13g1806 . Aip03g01997 . . . Amo13g2279 . . . . . . . . . Bva07g01798 . . . . . . . Dod03g1892 . . . . Gma06g02319 . . . Gso6g2109 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto4g2906 . . . . . . . . . . . . . . . . . .
Vvi19g0337 . . . . . . . Aed5g1105 . . . . . . . . . . . Apr5g0077 . . . . . . Bva09g00815 Bva09g00815 . . . Cca04g01376 . . . . . . . . Gma06g02320 Gma12g01359 . . Gso6g2110 Gso6g2110 . . Lal9g0495 . Lal2g0557 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu3g1861 Sto7g0309 . . . . . . . . . . . . . . . . . . Vra2g1311
Vvi19g0338 . . . . . . Aed1g0654 . Aev10g2391 . Ahy18g1253 . Aip08g01335 . . . Amo18g1450 . Apr2g0353 . . . . . . . . . Car01g02089 . Cca10g01055 . . . Dod10g1044 . . . . . . . Gma12g02069 Gma13g02490 . . . . . Lal1g1651 . Lal20g0305 . . . . . . . . . . . . . . . . . . . . . Lja3g4492 Mal4g1036 . . . . . . . Mtr2g2690 . . . . . . . Psa5g5662 . . . . . . . . . Pvu5g0895 . . . . . . . Ssu8g1097 . . . Tpr7g3595 . . . Tsu02g04469 . . . . . . . . . . . . .
Vvi19g0339 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva09g00813 Bva09g00813 . . . . . . . . . . . . . . . . . . . . . . . . . Lal11g1397 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto7g0310 . . . . . . . . . . . . . . . . . . .
   
Previous Page 2706 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi19g0330 Chr19 3559221 3561354 +
Aed Aed1g0650 Chr1 7821616 7823730 +
Aed Aed5g1115 Chr5 9432361 9434925 -
Ahy Ahy18g1255 Chr18 22019903 22023425 -
Ahy Ahy13g1812 Chr13 29555113 29558515 -
Aip Aip08g01337 Chr08 20999278 21001377 -
Aip Aip03g02007 Chr03 28448631 28451703 -
Amo Amo18g1452 Chr18 27484029 27487146 -
Apr Apr2g0356 Chr2 4240475 4244232 -
Apr Apr5g0085 Chr5 776935 780472 -
Bva Bva09g00820 Chr09 4191634 4195219 -
Bva Bva07g01792 Chr07 16389001 16392259 +
Car Car01g02086 Chr01 46315569 46318836 +
Cca Cca10g01058 Chr10 13058683 13061226 -
Cca Cca04g01386 Chr04 18075541 18079130 -
Gma Gma06g02286 Chr06 42695020 42698563 +
Gma Gma12g01366 Chr12 21232373 21235139 -
Gma Gma13g02487 Chr13 39736975 39740343 +
Gso Gso6g2080 Chr6 38733150 38736735 +
Gso Gso6g2080 Chr6 38733150 38736735 +
Gso Gso6g2080 Chr6 38733150 38736735 +
Lal Lal20g0308 Chr20 2357232 2359760 -
Lal Lal1g0560 Chr1 3614669 3617194 -
Lal Lal11g1398 Chr11 17429711 17432726 -
Lja Lja3g4495 Chr3 86680719 86683949 -
Mal Mal4g1039 Chr4 14406280 14408808 -
Mtr Mtr2g2686 Chr2 39977160 39980694 +
Psa Psa5g5659 Chr5 492318883 492321420 +
Ssu Ssu8g1102 Chr8 19352026 19354281 -
Ssu Ssu3g1849 Chr3 58015929 58018463 +
Sto Sto4g2900 Chr4 29609844 29612378 +
Tpr Tpr7g3592 Chr7 44545379 44549054 +
Tsu Tsu02g04465 Chr02 53580223 53582208 +
Vra Vra2g1324 Chr2 21083118 21086601 -
Vvi Vvi19g0331 Chr19 3562361 3563480 -
Aed Aed1g0653 Chr1 7843999 7845276 +
Aed Aed5g1114 Chr5 9427932 9429395 +
Ahy Ahy13g1810 Chr13 29548054 29549709 +
Aip Aip03g02005 Chr03 28429475 28442788 +
Apr Apr2g0355 Chr2 4237307 4239032 +
Apr Apr5g0084 Chr5 774327 776098 +
Bva Bva07g01793 Chr07 16392809 16393999 -
Cca Cca10g01057 Chr10 13056342 13058105 +
Cca Cca04g01385 Chr04 18071071 18072799 +
Gma Gma06g02287 Chr06 42708649 42710615 -
Gma Gma12g01365 Chr12 21210485 21215956 -
Gma Gma12g02071 Chr12 41420470 41422446 +
Gma Gma13g02488 Chr13 39747968 39749523 -
Gso Gso6g2082 Chr6 38750068 38752057 -
Gso Gso6g2082 Chr6 38750068 38752057 -
Gso Gso6g2082 Chr6 38750068 38752057 -
Gso Gso6g2082 Chr6 38750068 38752057 -
Lal Lal9g0500 Chr9 3382546 3383911 +
Lal Lal2g0564 Chr2 3402375 3403748 -
Lal Lal20g0307 Chr20 2355187 2356342 +
Lan Lan8g1404 Chr8 20899841 20901225 -
Lan Lan8g1404 Chr8 20899841 20901225 -
Lan Lan8g1404 Chr8 20899841 20901225 -
Lja Lja3g4494 Chr3 86678708 86680072 +
Mal Mal4g1038 Chr4 14403908 14405297 +
Mal Mal5g2378 Chr5 63735921 63737580 -
Mtr Mtr2g2687 Chr2 39980993 39982548 -
Mtr Mtr8g1689 Chr8 24970531 24972888 -
Psa Psa5g5660 Chr5 492321261 492323616 -
Ssu Ssu8g1100 Chr8 19349522 19350699 +
Ssu Ssu3g1850 Chr3 58024866 58027441 -
Sto Sto4g2901 Chr4 29613610 29614772 -
Tpr Tpr7g2110 Chr7 26886391 26887980 -
Tsu Tsu08g02061 Chr08 27314282 27315906 +
Vra Vra2g1323 Chr2 21071228 21073048 +
Vvi Vvi19g0332 Chr19 3568094 3569244 -
Ahy Ahy13g1808 Chr13 29464766 29466314 +
Aip Aip03g02001 Chr03 28362422 28363782 +
Apr Apr5g0081 Chr5 762158 763907 +
Bva Bva07g01796 Chr07 16400568 16401683 -
Car Car01g02087 Chr01 46319717 46321442 -
Car Car07g02159 Chr07 29241184 29242521 +
Cca Cca04g01383 Chr04 18050096 18052524 +
Gma Gma06g02294 Chr06 42805126 42806867 +
Gma Gma12g02070 Chr12 41414633 41420157 -
Gma Gma13g02489 Chr13 39752377 39753677 +
Lal Lal2g0561 Chr2 3393422 3394787 +
Lja Lja3g4493 Chr3 86676064 86677454 +
Mtr Mtr2g2688 Chr2 39985153 39986796 -
Psa Psa5g5661 Chr5 492356096 492357608 -
Sto Sto7g0306 Chr7 2157448 2158561 -
Tpr Tpr7g3593 Chr7 44549700 44551304 -
Tsu Tsu02g04466 Chr02 53583370 53584649 -
Vra Vra2g1318 Chr2 20995440 20996920 -
Vvi Vvi19g0333 Chr19 3573657 3573974 -
Vvi Vvi19g0334 Chr19 3579036 3581410 +
Aed Aed5g1110 Chr5 9404470 9411701 -
Apr Apr5g0080 Chr5 744950 752530 -
Bva Bva07g01797 Chr07 16402101 16406107 +
Car Car07g02157 Chr07 29179215 29182935 -
Cca Cca04g01380 Chr04 18020827 18032672 -
Gma Gma06g02296 Chr06 42815412 42819979 +
Gso Gso6g2084 Chr6 38871191 38876500 +
Ssu Ssu3g1857 Chr3 58083530 58084030 +
Sto Sto4g2904 Chr4 29632518 29634904 +
Vra Vra2g1313 Chr2 20820629 20837490 -
Vvi Vvi19g0335 Chr19 3604727 3606157 +
Aed Aed5g1108 Chr5 9375371 9379664 -
Apr Apr5g0078 Chr5 727549 731674 -
Cca Cca04g01378 Chr04 17974072 17978926 -
Gma Gma12g01360 Chr12 21052436 21060965 -
Lal Lal9g0496 Chr9 3329563 3335040 -
Lan Lan8g1409 Chr8 21121601 21127736 +
Ssu Ssu3g1860 Chr3 58124898 58130794 +
Vra Vra2g1312 Chr2 20804656 20809039 -
Vvi Vvi19g0336 Chr19 3606466 3608810 +
Ahy Ahy13g1806 Chr13 29424349 29430133 -
Aip Aip03g01997 Chr03 28322717 28328165 -
Amo Amo13g2279 Chr13 38968322 38973947 -
Bva Bva07g01798 Chr07 16407328 16410726 +
Dod Dod03g1892 Chr03 39939912 39965869 +
Gma Gma06g02319 Chr06 43970377 43975778 +
Gso Gso6g2109 Chr6 39946899 39951638 +
Sto Sto4g2906 Chr4 29640452 29643975 +
Vvi Vvi19g0337 Chr19 3610727 3613891 +
Aed Aed5g1105 Chr5 9360187 9365120 -
Apr Apr5g0077 Chr5 721792 725954 -
Bva Bva09g00815 Chr09 4174976 4176809 -
Bva Bva09g00815 Chr09 4174976 4176809 -
Cca Cca04g01376 Chr04 17948509 17953669 -
Gma Gma06g02320 Chr06 43987482 43993300 +
Gma Gma12g01359 Chr12 21037772 21047602 -
Gso Gso6g2110 Chr6 39962427 39967927 +
Gso Gso6g2110 Chr6 39962427 39967927 +
Lal Lal9g0495 Chr9 3323643 3327031 -
Lal Lal2g0557 Chr2 3373882 3378691 -
Ssu Ssu3g1861 Chr3 58143035 58145484 +
Sto Sto7g0309 Chr7 2170926 2172932 +
Vra Vra2g1311 Chr2 20794828 20799317 -
Vvi Vvi19g0338 Chr19 3615046 3619201 +
Aed Aed1g0654 Chr1 7845908 7849365 -
Aev Aev10g2391 Chr10 23547064 23549442 +
Ahy Ahy18g1253 Chr18 21941001 21945001 +
Aip Aip08g01335 Chr08 20927900 20931931 +
Amo Amo18g1450 Chr18 27415225 27418909 +
Apr Apr2g0353 Chr2 4225970 4229988 +
Car Car01g02089 Chr01 46325679 46330141 -
Cca Cca10g01055 Chr10 13037553 13042497 +
Dod Dod10g1044 Chr10 28670461 28676303 -
Gma Gma12g02069 Chr12 41408161 41412766 +
Gma Gma13g02490 Chr13 39756985 39761334 -
Lal Lal1g1651 Chr1 18940531 18948565 -
Lal Lal20g0305 Chr20 2345768 2350773 +
Lja Lja3g4492 Chr3 86662724 86668418 +
Mal Mal4g1036 Chr4 14325093 14327472 +
Mtr Mtr2g2690 Chr2 40001181 40004987 -
Psa Psa5g5662 Chr5 492385648 492388303 -
Pvu Pvu5g0895 Chr5 22874260 22878482 +
Ssu Ssu8g1097 Chr8 19323609 19326893 +
Tpr Tpr7g3595 Chr7 44557572 44564297 -
Tsu Tsu02g04469 Chr02 53595665 53598882 -
Vvi Vvi19g0339 Chr19 3620267 3623315 -
Bva Bva09g00813 Chr09 4171887 4174022 -
Bva Bva09g00813 Chr09 4171887 4174022 -
Lal Lal11g1397 Chr11 17426691 17428800 -
Sto Sto7g0310 Chr7 2174695 2176393 +