Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0080 ATGGAAATCCCATCTTCAAATGGATCAGTTTTGAAGCGTTCGCTGAGAAAGAAAGTGAATTTGAGGAACTATGATGAGGATCTGATGGATGAGTTGTTTGAGAAGCAGTTGGGTGGTGGTTTGAAGAAGAGGAATAAGACCAAAGAAGATTTGGAGAAGGAGACTGAAACCGAGGCTATGATTGCGTTTTCGCTCGGTTTTCCTATTGATGCTTTGCTTGATGAGGAGGTTAGAGCTGGGGTTGTGAGGGAGATGGGTGGGAAGGAGCAGAATGATTATATTGTCATAAGGAACCATATATTGGCTCTGTGGAGGGGGAATGTGAGGTTGTGGTTGAGTAAAGGAATGATTAGAGAAACTGTGAGCAATGAGTATGAACATTTGATTAATTCTGCTTATGACTTTCTTTTGTATAATGGGTACATAAATTTTGGGGTTTCACCGTCATTTACTTCTATGTTGCCTGAGGCAACTGAAGGGACTGTGGTTGTTATAGGAGCCGGCCTTGCTGGGTTGGCAGCAGCGAGGCAGCTCTTGTCGTTTGGCTACAAGGTTGTGGTTTTGGAAGGTAGGAACCGGCCTGGTGGTAGAGTTTATACTCAGAAGATGGGGTGTGAGGGCAAATTTGCTGCCATAGATCTTGGCGGGAGTGTTATTACTGGCATTCATGCCAACCCTTTAGGGGTTCTGGCTCGACAACTTTCTATACCGCTACATAAAGTCAGAGATAATTGTCCTTTATATAAGCCAAATGGGGCGCCAGTTGATAGGGAAATAGATGCAAGTGTTGAGTTTGTATTTAATAGGTTGCTTGACAAGGTCATGGAGCTGAGGCAAATTATGGGTGGATTTGCAAGTGATACCTCGCTTGGTTCTGTCTTGGAAACGCTTAAGCTTTTGTATAATGTGGCTCGAAGTACTGATGAGAAGCAGTTGTTTGATTGGCATCTTGCGAATTTGGAATATGCTAATGCTGGTTGTCTTTCAAATCTTTCTGCTGCCTATTGGGATCAGGATGATCCTTATGAAATGGGTGGTGATCACTGCTTTCTTGCTGGGGGCAATTGGAGGTTGATAAAAGCTTTATGTGAAGGAGTTCCTATTTTTTATGGAAAGACTGTCAATACTATCAGATATGGAAATGAGGGTGTTGAGGTTATTGCAGGGGATGAAGTCTTTCAAGCTGATTTTGCCTTATGCACTGTGCCTCTTGGAGTTCTAAAAAAGAAGGCCATCAGTTTTCAACCTGAATTACCTGCAAGGAAACTGGCAGCTATTGAGAGGATGGGGTTTGGGCTGCTGAACAAAGTTGCTATGGTTTTTCCTTATGTGTTTTGGGGGGAAGATCTTGACACATTTGGATGTCTCAATGAATATAGTCATCAACGTGGGGAATTTTTCCTGTTGTACAGTTACCATACTGTTTCTGGAGGTCCAGCACTTGTTGCTCTGGTGGCTGGTGAAGCCGCACAAGTTTTTGAATCCACAGATCCTTCCATTTTGCTCAATCGGGTTTTGACTGTTTTAAAAGGTATATTTCACCCTAAAGGCATTGTTGTGCCCGATCCAATACAGTCAATTTGTACAAGATGGGGCAGTGATCCCCTTTCTTATGGTTCATACTCGCATGTTAGTGTGCAATCATCTGGTGGGGATTATGATATACTTGCTGAAAACGTGGGGAATCGGCTTTTCTTTGCTGGTGAGGCCACTAGCAGGTATTATCCTGCCACTATGCATGGTGCTTTCTTGAGTGGCCTGAGAGAAGCTTCACGCATTTACCGCTCATCTCGGGTTCAGCAAAATTATCCTAGGAAGTGCATACTTAAGAATATTGGACCAAACAATGATGTACTGGTTGATTTATTCAAGAAGCCTGATTTCGAATCTGGGAAATTTGCCTTCATCTTTGATTCTTCATCTGAAAGTCTCCAGTCACTGGGGCTTCTGCAAATCACTTTTGGTAGCGTTGAAGAAAGTTACATGGAGGTATTAAACAGCTACCCGAATCTCCCAAAGTTGCCTTTGCAGCTTTACACTATTATATCCCGTGAACAGGTGCACAAGCTAGAACAAATTAAAGGAGGGGATGGATGCAGGTTGTCATATTTGATAAAAATCCTTGGGTTGAAGCTTATGGGATTAAATGCTATATATAATGCAGGTAATGCATTAATAGCTAGCATTGCTTATTCGCGAAAAGGGAGGGGGAGGAATCGCATAATTACTTGGTAA 2235 0.4264 MEIPSSNGSVLKRSLRKKVNLRNYDEDLMDELFEKQLGGGLKKRNKTKEDLEKETETEAMIAFSLGFPIDALLDEEVRAGVVREMGGKEQNDYIVIRNHILALWRGNVRLWLSKGMIRETVSNEYEHLINSAYDFLLYNGYINFGVSPSFTSMLPEATEGTVVVIGAGLAGLAAARQLLSFGYKVVVLEGRNRPGGRVYTQKMGCEGKFAAIDLGGSVITGIHANPLGVLARQLSIPLHKVRDNCPLYKPNGAPVDREIDASVEFVFNRLLDKVMELRQIMGGFASDTSLGSVLETLKLLYNVARSTDEKQLFDWHLANLEYANAGCLSNLSAAYWDQDDPYEMGGDHCFLAGGNWRLIKALCEGVPIFYGKTVNTIRYGNEGVEVIAGDEVFQADFALCTVPLGVLKKKAISFQPELPARKLAAIERMGFGLLNKVAMVFPYVFWGEDLDTFGCLNEYSHQRGEFFLLYSYHTVSGGPALVALVAGEAAQVFESTDPSILLNRVLTVLKGIFHPKGIVVPDPIQSICTRWGSDPLSYGSYSHVSVQSSGGDYDILAENVGNRLFFAGEATSRYYPATMHGAFLSGLREASRIYRSSRVQQNYPRKCILKNIGPNNDVLVDLFKKPDFESGKFAFIFDSSSESLQSLGLLQITFGSVEESYMEVLNSYPNLPKLPLQLYTIISREQVHKLEQIKGGDGCRLSYLIKILGLKLMGLNAIYNAGNALIASIAYSRKGRGRNRIITW* 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0080 744 ProSiteProfiles SWIRM domain profile. 52 153 IPR007526 GO:0005515
Apr5g0080 744 SUPERFAMILY FAD-linked reductases, C-terminal domain 430 542 - -
Apr5g0080 744 Gene3D - 244 549 - -
Apr5g0080 744 SUPERFAMILY FAD/NAD(P)-binding domain 160 595 IPR036188 -
Apr5g0080 744 SUPERFAMILY Homeodomain-like 54 153 IPR009057 -
Apr5g0080 744 Gene3D - 162 592 IPR036188 -
Apr5g0080 744 PANTHER FLAVIN MONOAMINE OXIDASE 37 736 - -
Apr5g0080 744 Pfam SWIRM domain 69 144 IPR007526 GO:0005515
Apr5g0080 744 Pfam Flavin containing amine oxidoreductase 169 593 IPR002937 GO:0016491
Apr5g0080 744 Gene3D - 57 155 IPR036388 -
Apr5g0080 744 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 2 37 736 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0080 Apr-Chr5 744950 752530 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-SWI3 Apr5g0080 Amino_oxidase 3.3e-88 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0080 - - gmx:100809901 1249.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0080 5 744950 752530 Apr5g0080 5 744950 752530 ECH