Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1860 ATGTGCATCGTAAGCAGTGCCATCTCTGCTGATCCTATTCGAGCTTCCACTCCAATGGCTACATTCCTCTCAGTGTTAACAGCATTCATCATGCCATTGCCAACCCCTTTGTGCCAGAGGTACTGTGGAAAACCTATAGCCTTGTTTTCTCACACCTACCATTTGGTTACTTCCAGGCACTcaaaattgttaagaaaaattgaCCTTTTCGAAACCCAGAACCACATTTTGTCAGTACAGCACAGGCGTTGCTTGGAAGCGTCAGCTGTAAAAGCAGTGGATGCCTTGCATTCAAAGTTCAGGGCAGTGGATAATTTGGATGCATGCAATACCACCCGTGTCCTTAAAGCTTTCCAGAATGCTCGGGTTGGATCTCATCACCTCGGCGGTTGCACTGGTTATGGTCATGATGAAGGTGGGGGCCGTGGGGCTCTTGACCAGGCTTTTGCAGAAATCGTTGGGCCTGATTGTAATGTTCTCATCTGTCAACAGTTCTTTTCAGGTACTCATGCTATCACCTGTGCTTTATTTGCTCTCCTGAGGCCAAGGGATGAGCCTTTGGCAGTCGCTGGTGCTCCCTATGACACGCTGCAGGAAGTAATTGGGAAAAGGGACTCCGGTGGACTGGGTTCCCTCCAAGATTTTGGGGTGAAGTACCGAGAAGTTCCACTACCTGAGGATGGTGGACTTGACTGGAATGCACTGATGAGTGCGATCAAACCCAAAACAAAATGCGCGCTCATACAGCGTTCATGTGGTTATTCATGGCGTCAGAGTTTGAGTTTGCAAGACCCCAGCTGCTCAGTCATGGTGGACAATTGCTATGGCAAATTTGTTGAAAGCATTGAACCTTCCATGGTGGGTGCAGATTTGATCGCAGGCAGTCTGATCAAGAATCCAAGTGAAACGATTGCACCGTGTGGTGGATACCGGGACTTGGTGTGGATTGTGGTTCAACCCCCGGTGATATCATGCGAGCCTTTTTCCAGGGACTATTTCTTTCCCCTCAAATGGTTGGAGAAGCAGTCAAGCCACGCCCCTGCGTCCTCGTTCTCATACGGTTCAGGTTTTCTTACTGAatcttctttgttttctttctcaATGAAATATGTTGTCTGCATTACTAGCAAAAATGTTTTGCTGGCTGTCCAGCTTGGAAGCCGCGAGCGTCTCCTTGCTTTCTGTGGGGCTGTTCAGAGAAACTCTCTAGTAGGTTCATATACCAAACCAGTTGCAGGCACCACTCCAGGAAATGCATCAGAGGTGATTTTTGCTGATGGAACCTTCATAGATGGGAGTACTAGTGAGCTTTCATGTGATGGACCTCTTAGAGGGTCATTTGCTGTATTTTGCCAGGGTGGCACCCATGGGACTCAATGGGGACTAGTTCTAGGAGAAGTGTTGAAATctttatga 1416 0.4682 MCIVSSAISADPIRASTPMATFLSVLTAFIMPLPTPLCQRYCGKPIALFSHTYHLVTSRHSKLLRKIDLFETQNHILSVQHRRCLEASAVKAVDALHSKFRAVDNLDACNTTRVLKAFQNARVGSHHLGGCTGYGHDEGGGRGALDQAFAEIVGPDCNVLICQQFFSGTHAITCALFALLRPRDEPLAVAGAPYDTLQEVIGKRDSGGLGSLQDFGVKYREVPLPEDGGLDWNALMSAIKPKTKCALIQRSCGYSWRQSLSLQDPSCSVMVDNCYGKFVESIEPSMVGADLIAGSLIKNPSETIAPCGGYRDLVWIVVQPPVISCEPFSRDYFFPLKWLEKQSSHAPASSFSYGSGFLTESSLFSFSMKYVVCITSKNVLLAVQLGSRERLLAFCGAVQRNSLVGSYTKPVAGTTPGNASEVIFADGTFIDGSTSELSCDGPLRGSFAVFCQGGTHGTQWGLVLGEVLKSL 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1860 471 Gene3D - 137 312 IPR015421 GO:0003824
Ssu3g1860 471 PANTHER - 73 310 IPR009651 -
Ssu3g1860 471 PANTHER - 369 471 IPR009651 -
Ssu3g1860 471 Gene3D - 362 471 - -
Ssu3g1860 471 Gene3D - 83 136 - -
Ssu3g1860 471 SUPERFAMILY PLP-dependent transferases 114 310 IPR015424 -
Ssu3g1860 471 Pfam Methionine gamma-lyase 376 469 IPR009651 -
Ssu3g1860 471 Pfam Methionine gamma-lyase 90 310 IPR009651 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1860 - - gmx:100809166 535.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1860 3 58124898 58130794 Ssu3g1860 3 58124898 58130794 ECH