Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0334 ATGATGGATTCTCTGGGTTCGGGTGGGCCTGGCCCAAAGCGTTCATTGAGGAAGAAGGCGGGTTTGAAGAGTTATGATGAGAATTTGATGGATGATCTTATAGATAAGCATTTGGGTGGTTCCATGAAGAAGAAGAATAGAACGACACAGGACATAGAGAAAGAGACAGAGACAGAAGCCATGATAGCACTATCTGTAGGGTTTCCTATAGATGCATTGCTTGAAGAGGAGATTCAAGCAGGAGTAGTGAGTGAATTGGATGGGAAAGAACAAAATGATTACATAGTTGTGCGGAATCATATACTTGCAAGATGGAGAGATAATGTGCATTCATGGCTTTCAAAAGGTCAGATTAAAGAAACTGTGAGTAGTGAGTATGCTCATTTGATATCTTCGGCCTATGACTTTCTTCTGTATAATGGGTATATTAATTTTGGTGTTTCACCATCCTGTATGTCCCAAATTCCTGAGGAGGCTACTGAGGGATCAGTGATAATTGTTGGTGCTGGGCTTGCTGGATTAGCAGCAGCAAGACAACTGTTGTCATTTGGTTTCAAGGTTGTGGTTTTAGAAGGTAGGAATCGACCAGGGGGAAGAGTTTATACACAGAAGATGGGCCAGAAGGGTAATTATGCTGCTGTGGATCTTGGTGGCAGTGTTATTACTGGCATCCATGCCAATCCATTAGGAGTTCTTGCTAGACAACTATCCATTCCCCTTCATAAGGTTAGAGATCGGTGTCCCTTGTACAAGCCAGATGGAGAAGTCATTGACAAAGAAATTGATTCAATGATTGAAATCATCTTTAATAAGTTGCTCGATAAAGTCACCCAGTTAAGACAGATAATGGGTGGATTTGCAAATGACATTTCGCTTGGTTCGGTTTTGGAGACATTAAGGCAGTTGTATGCTGTGGTTAGAAGCACAGAGGAAAGACAATTGTTTGATTGGCATCTTGCAAACTTGGAATATGCAAATGCTGGATGTCTTACAAACCTTTCAGCTGCCTACTGGGACCAGGATGATCCTTATGAAATGGGTGGCGACCACTGCTTTCTTGCTGGGGGTAACTGGAGATTGATCAAGGCATTGTGTGAAGGAGTTCCTATATTCTATGGAAAGACTGTTCATACTATTAAGTATGGAAATGATGGTGTTGAGGTGATTGCTGGGGACCAAGTGTTTCAGGCAGATATGGTCCTGTGTACTGTGCCTCTTGGGGTCCTAAAGAAAAGGGCCATAAGATTTGAGCCAGAATTACCTGTAAGAAAGCTTGCTGCAATTGATAGATTGGGTTTTGGGTTGCTGAATAAAGTTGCCATGGTTTTCCCTCGAGTTTTTTGGGGGGAAGACCTGGACACCTTTGGGCGCCTCAGCAATTGTAGCCATAAACGTGGAGAATTCTTTTTGTTTTACAGTTATCATACTGTTTCTGGAGGTCCAGTACTTGTTGCTCTGGTGGCTGGAGAGGCTGCACAAGCATTTGAATACACGGATCCTTCCACTTTGCTACATCGTGTTCTAAACATACTCAGAGGGATATATACTCCAAAGGGCATCAATGTGCCTAATCCCATACAAACAATATGTACAAGGTGGGGCAGTGATCCCCTTTCCTATGGTTCATATTCTCATGTCAGGGTACGTTCCTCTGGCAGTGACTATGATATACTTGCAGAAAGTGTAGCAGGTCGGCTGTTCTTTGCAGGCGAGGCCACAAATAGGCAATACCCAGCCAGCATGCATGGTGCCTTTCTGAGTGGCTTAAGAGAAGCTTCATGCATTTTGGGAGCTACAAGGTCTCATCAAAGTAATTCCAGGAAATTAATGCAGAAAAATATTGGACCAAGCAATGATGTCTTGATAGATCTATTCAAAAGGCCTGATCTAGCATTTGGAAAGTTTAGCTTTATATTTAACCCATTGACAGTAGATCCAAAAGCAATGGGGATTATGAGAATTAGTGTTGGAAATTCCAGTAGTGAAAACAGTAGTGAAAAGGAAATAGAGAACAGTAGCCAGAATTCTCCAGACCTACCATTGCAGCTTTACACCATGTTATCTCGCGAACAGGCACATCAGGTTCAACTGATCGCTGGAGAGGATGAAAGTAGGTTGTCTTTCTTGCTTAAAGATCTTGGGCTGAAGCTAATGGGACCTAGTTCAATGGGAAGCATAGGCAACTCTTTGGCCGCTACCATTGCTAGTGCACGAAGAGGCAGGGGCAGGTACCGCGTTTCTTCTAAATATGATTTCAGTTCAATGCACTAA 2271 0.4284 MMDSLGSGGPGPKRSLRKKAGLKSYDENLMDDLIDKHLGGSMKKKNRTTQDIEKETETEAMIALSVGFPIDALLEEEIQAGVVSELDGKEQNDYIVVRNHILARWRDNVHSWLSKGQIKETVSSEYAHLISSAYDFLLYNGYINFGVSPSCMSQIPEEATEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGQKGNYAAVDLGGSVITGIHANPLGVLARQLSIPLHKVRDRCPLYKPDGEVIDKEIDSMIEIIFNKLLDKVTQLRQIMGGFANDISLGSVLETLRQLYAVVRSTEERQLFDWHLANLEYANAGCLTNLSAAYWDQDDPYEMGGDHCFLAGGNWRLIKALCEGVPIFYGKTVHTIKYGNDGVEVIAGDQVFQADMVLCTVPLGVLKKRAIRFEPELPVRKLAAIDRLGFGLLNKVAMVFPRVFWGEDLDTFGRLSNCSHKRGEFFLFYSYHTVSGGPVLVALVAGEAAQAFEYTDPSTLLHRVLNILRGIYTPKGINVPNPIQTICTRWGSDPLSYGSYSHVRVRSSGSDYDILAESVAGRLFFAGEATNRQYPASMHGAFLSGLREASCILGATRSHQSNSRKLMQKNIGPSNDVLIDLFKRPDLAFGKFSFIFNPLTVDPKAMGIMRISVGNSSSENSSEKEIENSSQNSPDLPLQLYTMLSREQAHQVQLIAGEDESRLSFLLKDLGLKLMGPSSMGSIGNSLAATIASARRGRGRYRVSSKYDFSSMH* 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0334 756 FunFam Lysine-specific histone demethylase 1A 58 158 - -
Vvi19g0334 756 PANTHER FLAVIN MONOAMINE OXIDASE 163 597 - -
Vvi19g0334 756 Gene3D - 246 551 - -
Vvi19g0334 756 Gene3D - 58 156 IPR036388 -
Vvi19g0334 756 MobiDBLite consensus disorder prediction 1 21 - -
Vvi19g0334 756 Pfam Flavin containing amine oxidoreductase 171 596 IPR002937 GO:0016491
Vvi19g0334 756 Pfam SWIRM domain 69 145 IPR007526 GO:0005515
Vvi19g0334 756 SUPERFAMILY FAD-linked reductases, C-terminal domain 432 545 - -
Vvi19g0334 756 ProSiteProfiles SWIRM domain profile. 53 154 IPR007526 GO:0005515
Vvi19g0334 756 Gene3D - 164 593 IPR036188 -
Vvi19g0334 756 SUPERFAMILY FAD/NAD(P)-binding domain 162 597 IPR036188 -
Vvi19g0334 756 MobiDBLite consensus disorder prediction 658 677 - -
Vvi19g0334 756 SUPERFAMILY Homeodomain-like 55 156 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0334 Vvi-Chr19 3579036 3581410 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-SWI3 Vvi19g0334 Amino_oxidase 1.2e-94 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0334 - - vvi:100262290 1458.35